KEGG   Neisseria lactamica: NLA_0710
Entry
NLA_0710          CDS       T01368                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
nla  Neisseria lactamica
Pathway
nla03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:nla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    NLA_0710 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nla03021]
    NLA_0710 (rpoC)
   03400 DNA repair and recombination proteins [BR:nla03400]
    NLA_0710 (rpoC)
Enzymes [BR:nla01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     NLA_0710 (rpoC)
Transcription machinery [BR:nla03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     NLA_0710 (rpoC)
DNA repair and recombination proteins [BR:nla03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      NLA_0710 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 Apocytochr_F_C Peptidase_M23
Other DBs
NCBI-ProteinID: CBN86315
UniProt: E4Z9X0
Position
82469..86644
AA seq 1391 aa
MNLLNLFNPLQTAGMEEEFDAIKIGIASPETIRSWSYGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDYECLCGKYKRLKFKGVTCEKCGVEVTLSKVRRERMGHIELAAPVAHIWFLK
SLPSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTPLQRRQLLTEDDYYNKLDEYGDDFDA
KMGAEGIRELLRTLNVAGEIEILRQELESTGSDTKIKKIAKRLKVLEAFHRSGMKLEWMI
MDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELHAPDIIVRNEKRM
LQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVG
PYLRLHQCGLPKKMALELFKPFIFHKLEKQGLASTVKAAKKLVEQEVPEVWDILEEVIRE
HPIMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQM
EARTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTRDRINAKGEGSLFADVKEVHRAYH
TKQVELGTKIIVRLREWVKNEAGEFEPVVNRYETTVGRALLSEILPKGLPFEYVNKALKK
KEISKLINASFRLCGLRDTVIFADHLMYTGFGFAAKGGISIAVDDMEIPKEKAALLAEAN
AEVKEIEDQYRQGLVTNGERYNKVVDIWGRAGDKIAKAMMDNLSKQKVIDRDGNEVDQES
FNSIYMMADSGARGSAAQIKQLSGMRGLMAKPDGSIIETPITSNFREGLTVLQYFIATHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSDGFVMKAVVQGGDVIEALRDR
ILGRVTASDVVDPSSGETLVEAGTLLTEKLVDMIDQSGVDEVKVRTPITCKTRHGLCAHC
YGRDLARGKLVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVEAKSNGTA
RFSSQMRYVANNKGELVVIGRSCEVVIHDDIGRERERHKVPYGAILLVQDGMAIKAGQTL
ATWDPHTRPMITEHAGMVKFENVEEGVTVAKQTDDVTGLSTLVVIDGKRRSGSASKLLRP
TVKLLDENGVEICIPGTSTSVSMAFPVGAVITVREGQEIGKGDVLARIPQASSKTRDITG
GLPRVAELFEARVPKDAGMLAEITGTVSFGKETKGKQRLIITDVDGVAYETLISKEKQIL
VHDGQVVNRGETIVDGAVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKISDKHIEVII
RQMLRRVNIADAGETGFITGEQVERGDVMAANEKALEEGKEPARYENVLLGITKASLSTD
SFISAASFQETTRVLTEAAIMGKQDELRGLKENVIVGRLIPAGTGLTYHRSRHQQWQEVG
QETAETQVTDE
NT seq 4176 nt   +upstreamnt  +downstreamnt
atgaatttgttgaacttatttaatccgttgcaaactgccggcatggaagaagagtttgat
gccatcaaaatcggcattgcttctcccgaaaccatccgttcatggtcttacggcgaagtt
aaaaaacctgaaaccatcaactaccgtacgttcaaacctgagcgcgacggtctgttctgc
gccaaaatctttggtccggtcaaagactacgaatgtttgtgcggtaaatacaaacgcttg
aaatttaaaggcgtaacctgtgaaaaatgcggcgtagaagtgaccctgtccaaagtgcgc
cgcgaacgcatgggccacattgaattggccgcaccggttgcccatatttggttcttgaaa
tccctgccttcccgcttgggtatggtactggacatgactttgcgcgacatcgagcgcgta
ttgtactttgaagcatttgtggtaaccgaccccggtatgactccgctgcaacgccgccaa
ttgctgactgaagacgattattacaacaagctggacgaatacggtgacgacttcgatgcc
aaaatgggtgcggaaggtatccgagaattgctgcggaccttgaatgtggcgggcgaaatc
gaaatcctgcgtcaagagctggaatctaccggttctgacaccaaaatcaaaaaaatcgcc
aaacgtttgaaagtattggaagccttccaccgttccggtatgaaactggaatggatgatt
atggacgtgctgccggtattgccgcctgatttgcgtccgttggttccattggatggcggt
cgttttgccacttccgatttgaacgatttgtaccgtcgcgtcatcaaccgcaacaaccgt
ctgaaacgtctgttggaactgcacgcgcccgacattatcgtccgcaacgaaaaacgtatg
ttgcaagaagcagttgactctctgttggataacggccgtcgcggtaaagccatgaccggt
gccaacaaacgtccgttgaaatcattggcagatatgattaaaggtaaaggcggccgtttc
cgtcaaaacctgctgggtaaacgtgtggactattcaggtcgttccgtgattaccgtaggc
ccatacctgcgcctgcaccaatgcggtctgccgaaaaaaatggcgttggaactgttcaaa
ccgttcattttccacaaattggaaaaacaaggtttggcttctaccgttaaagctgcgaaa
aaattggtagagcaagaagtacctgaagtatgggacatcttggaagaagtcatccgcgaa
catccgattatgctgaaccgtgcaccaaccctgcaccgtttgggtattcaagcgtttgag
cctattctgatcgaaggtaaagcgattcagttgcacccattggtgtgtgccgcatttaat
gccgactttgacggtgaccaaatggcggtacacgttccattgagcttggaagcgcaaatg
gaagcgcgcaccctgatgctggcttcaaacaacgtattgtctccggccaacggcgaacca
atcatcgtaccttctcaagatatcgtattgggtctgtactacatgacccgcgaccgtatc
aatgccaaaggcgaaggcagcctgtttgccgatgtgaaagaagtgcatcgtgcataccat
accaaacaggtcgagctgggtacgaaaatcatcgtacgtctgcgcgaatgggtgaaaaac
gaagccggagaattcgagcctgtcgttaaccgttacgaaacaaccgtcggccgcgcattg
ttgagcgaaatcctgccgaaaggcctgccgtttgaatatgtcaacaaggcgttgaagaaa
aaagaaatttctaaactgattaacgcatcgttccgtctgtgcggcttgcgtgacacagtt
attttcgccgaccacctgatgtacaccggtttcggttttgcggccaaaggcggtatttcc
attgcggttgacgatatggaaattccgaaagaaaaagcagccttgctggctgaagccaat
gccgaggttaaagaaatcgaagaccaataccgtcaaggtttggtgaccaacggcgaacgt
tacaacaaagtagtcgatatttggggtcgtgccggcgataagattgctaaagcgatgatg
gacaacctgtccaaacaaaaagttatcgaccgtgacggcaacgaagtcgatcaagagtca
ttcaactccatctatatgatggcggactccggtgcccgtggttctgcggctcagatcaaa
cagttgtccggtatgcgcggtttgatggcgaaacctgacggatcgattattgaaacgccg
attacctcaaacttccgcgaaggtctgaccgtattgcaatactttattgcgacccacggt
gcgcgtaaaggtttggcggataccgcattgaaaaccgcgaactccggttacctgacccgc
cgtttggtagacgtaactcaagacttggtggttgttgaagacgattgcggcacttcagac
ggctttgtgatgaaggcagtggtacaaggcggtgatgtgattgaagcattgcgcgatcgt
attttgggtcgtgttaccgcgtctgacgttgtcgatccgtcaagtggcgaaactttggtt
gaagccggtacgttgctgactgaaaaactggtggatatgatcgaccaatccggtgtcgat
gaagtcaaagtccgtacgccgattacttgtaaaacccgtcacggcctgtgtgcacactgt
tacggtcgtgacttggcacgcggcaaactggttaacgccggtgaggcagtcggtgtgatt
gctgcacaatccattggtgaaccgggtacccagttgaccatgcgtacgttccacatcggc
ggtgcggcatcccgtgcggcagcagccagccaagttgaagccaaatccaacggtacggca
cgattcagcagccaaatgcgttatgttgccaacaacaaaggtgagctggttgtcatcggc
cgttcttgtgaagtcgtgattcatgacgatatcggccgtgaacgcgaacgccacaaagta
ccttacggtgccatcctgctggtacaagacggtatggccattaaagctggtcaaaccttg
gcaacttgggatccgcatacccgtccgatgattaccgaacacgcaggtatggtgaaattc
gaaaacgtggaagagggtgttaccgttgccaaacaaaccgatgatgtaaccggtttgtcc
actttggtagtgattgacggcaaacgccgctccggcagcgcatccaaattgctgcgtccg
actgtgaaactcttggacgaaaacggcgtggaaatctgtattcccggtacgtccacttcg
gtttcgatggcattccccgttggtgcggtgattaccgtacgcgaaggtcaggaaatcggt
aaaggcgacgtattggcgcgtatcccgcaagcctcttccaaaacccgcgacattaccggc
ggtctgccgcgcgttgccgagttgtttgaagcacgcgtgccgaaagatgccggtatgctg
gcggaaattaccggtaccgtttccttcggtaaagaaaccaaaggcaaacagcgtctgatt
attaccgacgtggacggtgtggcatacgaaaccctgatttccaaagagaaacagattttg
gtacacgacggtcaagtggtaaaccggggcgaaaccattgtggacggcgcggtcgatccg
cacgatattctgcgtctgcaaggtatcgaagcactggcacgctacattgtccaagaggtg
caagaggtttaccgtctgcaaggtgtgaagatttccgacaaacacatcgaagtcatcatc
cgtcaaatgttgcgccgtgtgaacattgcggatgccggcgaaaccggcttcattaccgga
gagcaggtcgaacgcggcgatgtgatggctgccaatgaaaaagctttggaagaaggcaaa
gaaccggcacgttacgaaaacgtattgctgggtattaccaaagcctccctgtccaccgac
agcttcatttccgccgcatcgttccaagaaacgacccgcgttctgaccgaagccgcgatt
atgggcaaacaagacgagctgcgcggtctgaaagagaacgtgattgtcggtcgtttgatt
cctgccggtaccggtttgacttaccaccgcagccgccatcaacaatggcaagaggtaggg
caggagactgctgaaacccaagtaacggatgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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