KEGG   Numida meleagris (helmeted guineafowl): 110404187
Entry
110404187         CDS       T06015                                 
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
nmel  Numida meleagris (helmeted guineafowl)
Pathway
nmel03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nmel00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110404187 (CNOT1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nmel03019]
    110404187 (CNOT1)
Messenger RNA biogenesis [BR:nmel03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110404187 (CNOT1)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     110404187 (CNOT1)
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind DUF3819 CNOT1_HEAT
Other DBs
NCBI-GeneID: 110404187
NCBI-ProteinID: XP_021263903
Position
10:complement(1398011..1451108)
AA seq 2383 aa
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHAVTTDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLSQPTFQQSKMKPSDLSQVWPEANQNF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELE
QHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADVFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDIRQSEFQQLPYHRVFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELSKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQ
LINALVLHVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq 7152 nt   +upstreamnt  +downstreamnt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaacaggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacaaaaccgaactttatctcgacgctgtcctacgccattgacaatccgttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatatttggtctcgctttactgaactctttcagctcagat
ctacgaggttttgctgcccagttcatcaaacagaaactcccggatcttttacgctcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcttttggggtaggacag
gaacagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgcccc
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaacaatgatggagagttctctggcagactttatgcaa
gaagttggctatggcttttgtacaagcgttgaagaatgtcgcaacataatcatgcagttt
ggcgttcgggaggtgacggctgcccaggttgcccgggttttggggatgatggctcgaact
cattcggggctgacggatggtattccattgcaatctatttcggctcctggcagtgggatt
tggagtgatgggaaagataaaagcgatggagcacaagcccatacctggaatgtggaggtc
ttaattgatgttcttaaagagctgaatcctagcctggacttcaaagtagtaacctatgaa
ttggaccacccgggatttcagattcgtgacagcaagggcctgcatattgtggtgtttggc
atccagagagggctaggcatggaagtttttccagttaatgccatatacagaccttggaag
catgcagagggccagctctccttcattcaacattccctcataaacccggacatcttttgt
tttgctgactacccttgtcatgctgttaccacagacatcctgaaagcaccacccgaggat
gacaatcgagaaattgctacatggaagagcctggatttgatcgaatctctgttacggttg
gcagaagtgggacagtatgagcaggttaagcagctcttcagtttccccatcaagcattgc
ccagatatgttggtattggccttattgcagatcaatacttcctggcataccttgcgccat
gaactcatctccacgctcatgccaatcttccttggcaaccatcccaactctgccatcatt
ttgcactatgcatggcacgggcagggtcagtctccttcgattcgccagcttatcatgcat
gcaatggcagaatggtacatgagaggggagcagtatgaccaggcaaaattgtcacgtatt
cttgatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgtaattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagacaaaattcgggagcatggggagcccttcatccaagcctgcatgaccttctta
aagagaagatgtccatctatcctaggcggccttgctccagaaaaagatcaacccaaaagt
gctcagcttcctccagaaactttggcaactatgttggcgtgtctgcaagcttgtgctggg
agtgtttctcaggagctgtcagagaccatcctcaccatggtagccaactgcagtaatgtc
atgaacaaggccagacagcccccacctggagtcatgcccaaaggccgcccacccagcgcg
agcagcttggatgccatctctcctgtgcagatcgactcgcttgcgggaatggcgtctctt
agtttaggtggctcggctgctcctcacacccagagcatgcaaggcttccctccaaacttg
ggctctgcgttcagtactcctcagtcaccagcaaaagcatttcctcctctttccacccaa
aaccagacgacaggtttcagtggcattggaggactctcttcacagcttccagtaggtggt
cttactacgggtagcctgactggcataggaactggagccctgggccttcctgcagtgaac
aatgatccattcgtgcaaaggaagctgagcacatctggactgagccagcctacgttccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagaacttc
agcaaagaaatagatgatgaggcaaacagctacttccagcgtatctataaccatccacca
catccaaccatgtctgtagatgaggtcttggagatgctgcagaggtttaaggactccaac
attaaacgggaacgagaagtgtttaactgcatgctgaggaacttgtttgaggaataccgt
ttctttccccagtacccagataaagagctgcacataacagcctgcctctttggtgggata
atagagaaaggactggttacttacatggcattgggcctggcccttcgctacgttcttgaa
gccttacggaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagactgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttccctcatcacttgcaggagtacatagaatatggacagcagtctagagat
cctcctgtgaaaatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaagttccagcaaaagctcctcttgctggccaagtcagcactatagta
accacctcaaccaccaccactgttgcaaaaaccatcacaatcactcgaccaactggagtc
agcttcaagaaagatgtgccgccttccattaatactaccaacattgatacgctgttagta
gcaacggatcaaactgagagaattgtagaacctccagaaaacgtccaggaaaaaattgct
ttcatcttcaataatctgtctcagtcaaacatgacacagaaggttgaagaactgaaggaa
acagtgaaagaagagttcatgccctgggtatcacagtatctcgtgatgaagagagtcagt
attgagccaaattttcacagcttatattcaaacttccttgacactcttaagaatccagaa
tttaataaaatggttctgaatgaaacttacagaaatatcaaggtgctactgacatcagat
aaggctgcagccaacttctccgaccgttccttgttaaagaaccttggtcactggctgggg
atgattacactggctaaaaacaagcccatcttgcacacggatttggatgtgaagtcacta
ctactggaagcatatgttaagggacagcaggaattgctttatgtagtaccatttgttgcc
aaagtcttagaatccagtgtcaggagtgtggtcttcaggcctccaaacccatggacaatg
gccattatgaatgttttagctgagctgcatcaagaacatgatctaaaattgaatctgaag
tttgagatcgaagtgctctgcaagaatcttgccctggacatcaatgagctgaaacctgga
agtctcctgaaagataaggatcgtctgaaaaacctggatgagcagctgtctgctccgaaa
aaagacgtgaagcagccagaagagctaccacccatcacaaccaccactgcttctacaact
ccagctaccagcaccacttgtacagccacggttcctccacagcctcagtacagttaccac
gacatcaatgtctattccttaggagggttggctccacacattaccttaaatccaacgatc
ccgctgttccaggcccacccccagctgaagcagtgtgtgcggcaggctatagagcgagcg
gtgcaggagctcgtgcacccggtggtcgatcggtccatcaagattgccatgactacctgt
gagcagatagtcaggaaggacttcgcgctggattcagaggagtcgcgaatgcgtgtggct
gcgcaccacatgatgcggaacctgactgctgggatggccatgatcacctgcagggagcct
ttgctcatgagcatagctaccaacttgaagaacagtttcgctactgcactgagggcagcc
tccccacaacagagggacatgatggagcaagcagctgcccagctagcgcaggataactgt
gagctggcatgctgctttatccagaagacagctgtggaaaaagcaggccctgaaatggac
aagaggctggcaactgaatttgagctcagaaaacatgctagacaagagggccgtcggtac
tgtgatcctgttgtgttaacttaccaagctgaacggatgccagaacagatcaggttaaag
gttggaggtgtggacccaaaacagctggctgtttacgaagagtttgcacgcaacgtcccc
ggcttcttgcctaccaatgacttgactcagcctacaggattcttggctcaacctatgaag
caagcttgggccactgatgatgtagcacaaatctatgacaaatgcatgacagaactggag
cagcacctgcagtccattccccatactctggccatgaatcctcaagctcaagcattacgc
agcctgctggaggctgtggtggtagctcggaactcccgtgatgccattgcagctcttgga
ctgctgcagaaggctgtagagggcttactggatgccaccagtggggcagatgctgacctc
ctgcttcgctaccgcgagtgtcacctgctggtgctgaaggctctgcaggacggccgtgca
tatggatctccgtggtgtaacaagcagattactaggtgcctgattgaatgtagagatgag
tacaagtacaatgtggaagctgtggagctgctaatccgcaatcacctggttaacatgcag
cagtacgatcttcacctggctcagtccatggagaacggcttgaactatatggctgtggca
tttgccatgcagttggtgaagatccttctggtggatgagagaagtgtcgcccatgtaaca
gaggcagatgtgttccacacgatagagacgctcatgaggattaacgctcattccagaggg
aatgccccagaaggattaccccagttgatggaagtggtccgatcaaactacgaagcaatg
attgaccgtgctcacggaggtcccaatttcatgatgcattctggaatttcccaagcctct
gagtatgatgatccgccaggtctgagggagaaggcagaatacctgctgagggagtgggtg
aacctctaccattcagctgcagcgggccgcgacagtaccaaagcgttctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccagcaagggatcctgaaaacagatgac
ctgatcacccgctttttccggctttgcactgaaatgtgcgttgaaatcagctatcgtgct
caggctgagcaacagcacaaccctgctgccaaccccactatgatccgagccaagtgctac
cacaatctggatgcctttgtgcggctcattgcactgctggtgaagcactctggagaagca
accaacaccgttacgaagatcaacctcctgaacaaggttcttggtattgtggtgggagtt
cttctgcaagaccatgacattcggcagagtgagtttcagcagcttccttaccatcgtgtt
ttcatcatgttgctgttggaattaaatgctcctgagcatgtgttggagaccatcaacttc
cagacactcacagctttctgtaacacatttcacatcctgaggcctacaaaagctccaggt
tttgtttatgcctggctggaactgatctcccaccggatatttattgcaagaatgctggca
catacaccacagcagaagggttggcctatgtatgcccagttattgatcgatcttttcaag
tacttggctcctttcctcagaaatgtggaactcagcaaacctatgcaaattctttacaag
ggcactctacgtgtgttgctggtcctattgcacgatttcccagaatttctttgtgactac
cattatgggttctgcgatgtcatcccacctaactgtattcagctaaggaatctgatcctg
agtgccttcccacggaacatgaggcttccagaccctttcacccccaatctaaaggtggac
atgttgagtgaaattaatatcgctccacgaatactcaccaatttcactggagtgatgccg
cctcagttcaagaaagacttggattcctatctcaaaacccgttctccagtcacttttctg
tctgacttgcgcagcaacttacaagtatcaaacgaacctggcaaccgctacaacatccag
ctgattaatgcactggtgctccacgtcggtactcaggctattgcgcacatccacaacaaa
ggcagcacgccctccatgagcaccattacccactcagcacatatggacatcttccagaat
ttggcagtggacctggacaccgaaggtcggtacctcttcttgaatgcaattgccaaccag
ctgcgataccccaacagtcatacccactacttcagctgcaccatgctttacctgtttgca
gaggccaacactgaggctatccaggagcagatcacaagggttctcttggaacgactgatt
gtaaataggcctcatccctggggactccttattactttcatcgagctgataaaaaaccca
gcatttaagttctggaaccatgaatttgttcactgtgctccagaaattgaaaagttgttc
cagtcggttgcacagtgctgcatggggcagaagcaagcccagcaagtaatggaggggact
ggtgccagttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (9)   
   RefSeq(pep) (9)   
DNA sequence (11)   
   RefSeq(nuc) (9)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (32)   

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