KEGG   Numida meleagris (helmeted guineafowl): 110405840
Entry
110405840         CDS       T06015                                 
Symbol
USP42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42
  KO
K11855  ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12]
Organism
nmel  Numida meleagris (helmeted guineafowl)
Brite
KEGG Orthology (KO) [BR:nmel00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:nmel01002]
    110405840 (USP42)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:nmel04121]
    110405840 (USP42)
Enzymes [BR:nmel01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     110405840 (USP42)
Peptidases and inhibitors [BR:nmel01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   110405840 (USP42)
Ubiquitin system [BR:nmel04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    110405840 (USP42)
SSDB
Motif
Pfam: UCH UCH_1
Other DBs
NCBI-GeneID: 110405840
NCBI-ProteinID: XP_021267270
Position
13:complement(1033393..1054255)
AA seq 1325 aa
MTIVNKPKSSKSKKSSSRRSGKSKKPRTKNMKSRTANWGRIPPAKDPNQVSVNQGHGGAI
YCRSSEKSKPFALRDLVINDGIAPPQRILFPPEKICMDWQQTQNVGVGLFNLGNTCFINS
ALQCLTYTPPLANYMLSLEHTQSCNYQGFCMMCTMETHINRVLCCAHDAIKPAFVVHELK
RIGKHFRFGAQEDAHEFLRFTVDAMQQACLHGCTILDRSSQATTIIHQIFGGFLRSRVKC
LNCKAVSDTYEAFLDIPLDIKAVSSVTKALEQFVKPEQLDGENCYKCSKCKKMVPASKRF
TIHRSSNVLTISLKRFANFTGGKINKEVKYPEYLDLRAYMSQSIGEPLLYALYAVLVHSG
VNSHAGHYFCFIKAADGLWYQMNDATVVQSNIKTVLGQQAYLLFYIRRYDLTLGERAFYL
PAPSYPRSFLGQRGTNSKQAGFMGPRLPPHMIKNSSRLNGNGSLKEDPNTIGVTLKRPSS
APPTACVQNWAITRPSITDPSKKQKITISIHNKLPARQTVSQPDCLSALEDEELNKSVPS
STITNSSAAESTSNASTMLVATNVSKQEVPDEIFVEPVVNGNPKLSSDNIVSYGTEPSGK
SEEESSKGLFKRNCNVISPNGILIGKVVRTLQNSHPSCQNAEEERSQHELPKNDSLNGAI
SLDNESKENGLKLDDSSCQVQPVKPSEMLFSKTNGVLETMPIALSPVPQEIILDSFAYGQ
LNSLSEEISVPGPQKPSENDSLMETVVMEALLVYEESRKLPSDMSCETGNLFIQSDSETV
STKEEVAESIITKADNAQPNINGQHKVRKRSLDTEDEFLENFESEDSGEKDKPRRSKEPD
LISKENPLYIKGSLETEEELGQTSSIKSDVECSSKKPASLDTADKCQDTKDISNNYVEVP
PVNDSSITKLDKVLESQFSRENEGPTSRNFEENKHRKKDKNIYDSKKTDKEHYRRKRERS
DTEEREKQNSKPDGHSHKRRCSRSVETNKQSRHKQEYCNGNKYRSSYTERNSPDVSRNSG
KYSHYRSRSRGREQGRNRYYHSKGERTWSRERYYQDEPWRWQKCRHYNDYYYSHAKRDSR
ERKFSHYNKDFDKSSQAYSRSHKDYHYKSRRPHNSLSREEDVRHFSSHRADSRHCSVPQQ
QSEKYSHERHVLPPVLSHLNFEDSSPKNEKQSNRKRKYAESSESETEKKSRNVEKDVLDD
EKMKKYKKIKKKKKSKDKHREKDYKLYDSDFSVLHFDNDNRKRKKKKKKKKHIRKLKGFL
EYLDPRFQKKTWEKEGSCSPADCLCEQYRNEGSKQPDREGKPSCASESKNYSSIASNEYI
KDANY
NT seq 3978 nt   +upstreamnt  +downstreamnt
atgaccatagttaacaagccaaaatcttcaaagtctaaaaaatcatcatcgaggcggtct
ggcaaatccaagaaaccccgtactaaaaatatgaagtcacgcactgcaaactggggccgg
ataccacctgcaaaagatccaaaccaggtctctgtgaaccaaggacatggaggtgctatt
tattgtagatcatccgaaaaatctaaaccttttgccctaagagatctagtcattaatgat
ggaattgctccaccacaaaggattctttttccacctgagaagatttgtatggattggcaa
caaacacaaaacgttggagttggactcttcaatcttggcaatacatgttttattaattct
gctctacagtgtttgacttacacacccccactcgccaactacatgctttcccttgagcac
acccagtcatgtaactatcaaggcttctgcatgatgtgcacgatggaaactcacattaac
cgagtcctgtgttgcgctcatgatgccatcaaacctgcatttgttgtccatgaacttaaa
cgaataggaaaacatttccgctttggcgctcaggaagatgcgcacgagttcttacgcttc
actgttgatgctatgcagcaagcgtgtttgcatggatgtaccatattggacagatcttct
caagctaccaccatcattcatcaaatatttggaggatttctaagatccagagtaaagtgc
ttgaactgcaaagcagtttcggatacatatgaggcattccttgatatacctctggatata
aaggcagtttcatctgttaccaaagctctagaacagtttgtgaaacctgagcagctggac
ggtgaaaattgctataaatgtagcaaatgtaagaagatggtgccagcatcaaagaggttt
acaatacatcgctcttccaatgttctcacgatatcactgaaaagatttgcaaatttcaca
ggtggaaagatcaacaaggaagtaaaatatcctgagtatttggatcttcgagcttatatg
tctcaatcaattggagaaccactcctttatgccttatatgcagttttggtacatagtggt
gtcaattctcatgcaggacactatttctgcttcataaaggctgctgatggactttggtat
caaatgaatgatgctacagtagtgcaaagtaacatcaaaacagttctcggtcagcaagct
tatttactattttatatcaggcgctatgatttgacactcggagaacgtgctttttactta
ccagcaccgtcttatccccgttcattccttggtcagagggggactaatagtaagcaggct
ggctttatgggaccacgacttcctcctcatatgattaagaattcgagtcgtttaaatgga
aatggatctttgaaagaggatcccaataccattggcgtcaccttaaagaggccatcttca
gctccaccaacagcttgtgttcaaaactgggcaattaccaggccttcaattactgaccca
tcaaaaaaacagaagatcactatcagtattcataacaaattgcctgcacgtcagaccgtg
tcgcagcctgactgtcttagtgctctggaggatgaggagctaaacaagtctgttccttca
tccacaattacaaattcttctgcagcagagtctacctcaaatgcatctacaatgttagtt
gctactaatgtttccaagcaagaagttccggatgaaatttttgttgagccagtagtgaat
ggaaatcctaaactcagctctgataacatagtctcttatggtacagaaccttcaggaaaa
tctgaggaggagtcgtcaaagggcttatttaaaaggaattgcaacgtaatatctcctaat
ggaattttgattggaaaggtagtccgtacattgcagaattcccatccttcctgtcagaat
gctgaagaggaaagatcccagcatgagctgccaaaaaatgattcattaaatggtgctatt
agtttagataatgaatctaaagaaaatggactgaaacttgatgattccagttgccaagtc
caacctgttaaaccttctgaaatgttattttctaaaaccaatggagtgcttgaaacaatg
cctatagctttgtctccagtccctcaagaaataatcctagattcctttgcgtacggccag
ttgaacagcttgtcagaggaaataagcgtccctggacctcagaaaccttctgagaatgat
tctcttatggaaacagtagtgatggaagcgctgttggtctatgaagaatccaggaaactt
ccttctgacatgagctgtgagactgggaatctttttattcagtcagattctgaaaccgtt
tctaccaaagaagaagttgctgaaagtattataacaaaagctgataatgcacaacccaat
atcaatggtcagcacaaggttaggaaaagatccttggacactgaagatgaattccttgaa
aattttgagtctgaagacagtggtgagaaagacaaaccaagaagatcaaaagaacctgat
ctcatttcaaaagaaaatcctttgtatatcaaagggtctctcgagactgaagaggaatta
gggcagacttcctctataaagtctgatgttgaatgtagttctaaaaaacccgcatctctg
gatactgcagataaatgccaagatacaaaggacatatctaataactatgtagaagtccca
cctgttaatgactcttctattacgaagctggataaagttttggagagtcaattttctaga
gaaaatgagggaccgactagtaggaattttgaagaaaataaacataggaaaaaagataaa
aatatatatgattctaaaaaaactgacaaagagcactaccggagaaaaagagaacgctct
gatacagaagagagggagaagcaaaacagcaaaccagatggtcattcccacaagaggagg
tgctctcgtagtgtggaaacaaacaagcaaagtcgtcataagcaggagtattgcaatgga
aacaagtacagatcttcctatactgaaagaaacagccctgatgtcagcagaaactcaggg
aaatattctcattacagatctcgaagcagaggacgagaacaaggtaggaatagatattac
cattccaaaggagagagaacttggagcagagaaagatactatcaagatgaaccatggaga
tggcaaaaatgcagacactacaatgattactattactctcacgctaaaagagatagtcga
gaaagaaagttctcccattacaataaagattttgacaaatcaagtcaagcttacagcagg
tcacataaggattatcattacaaaagcagacggcctcacaactcactctctagagaggag
gatgtacgtcactttagcagccacagagcagactcacggcattgttcagtacctcagcag
caatctgaaaaatattctcatgaaagacatgtacttccacctgtgttatctcatctaaat
tttgaggactcttcccccaaaaatgaaaaacaaagcaacagaaaaagaaaatatgcagaa
agtagtgaaagtgaaacagaaaagaaaagcagaaatgtagaaaaagacgttttggatgat
gaaaagatgaaaaaatacaagaagatcaagaagaaaaagaagtccaaagataaacatcga
gagaaggattacaaactttatgattcggatttctctgtgctccactttgacaatgacaat
cgcaaacgtaagaaaaaaaagaaaaagaagaaacacatcaggaaattgaaaggcttcttg
gaatacttagatccccgtttccagaagaaaacatgggagaaggaaggatcttgctctcca
gctgactgtttatgtgagcaatacagaaatgagggcagtaaacaacccgacagggaaggg
aagccttcctgtgcaagtgaaagcaagaactacagctccattgcatccaatgagtatatt
aaagatgcgaattactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (6)   
   RefSeq(nuc) (4)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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