KEGG   Natrialba magadii: Nmag_0608Help
Entry
Nmag_0608         CDS       T01176                                 

Gene name
ligB
Definition
(GenBank) DNA ligase (ATP)
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
nmg  Natrialba magadii
Pathway
nmg03030  DNA replication
nmg03410  Base excision repair
nmg03420  Nucleotide excision repair
nmg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nmg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Nmag_0608 (ligB)
   03410 Base excision repair
    Nmag_0608 (ligB)
   03420 Nucleotide excision repair
    Nmag_0608 (ligB)
   03430 Mismatch repair
    Nmag_0608 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nmg03032]
    Nmag_0608 (ligB)
   03400 DNA repair and recombination proteins [BR:nmg03400]
    Nmag_0608 (ligB)
Enzymes [BR:nmg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Nmag_0608 (ligB)
    6.5.1.6  DNA ligase (ATP or NAD+)
     Nmag_0608 (ligB)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Nmag_0608 (ligB)
DNA replication proteins [BR:nmg03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Nmag_0608 (ligB)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Nmag_0608 (ligB)
DNA repair and recombination proteins [BR:nmg03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Nmag_0608 (ligB)
   NER (nucleotide excision repair)
    Other NER factors
     Nmag_0608 (ligB)
   MMR (mismatch exicision repair)
    Other MMR factors
     Nmag_0608 (ligB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: ADD04194
UniProt: D3SYT3
Position
complement(600229..602061)
Genome map
AA seq 610 aa AA seqDB search
MEFATFADRAATIEAESADLEIVAHVRDLLAEAGDDLPIVARFVQGRVFPAWDSTTLDIG
PNTCYEAIARAAGTNVDADDVEERLADRGEIGAVAASYDFGGQQGLGAFMSGGGSGAGGA
VDNNDDQDDRNNGGNGSNSGNDSNSSNDSNSSNGTGDLTVREINDTLTDLAAAEGSGSQD
RKVDLLFGLFNRCSSDEARYLARLVLSEMRIGVGEGTVRDAIAEAFEVPQEPVERALQVS
NDYGQVAETAREDGVDGLDEIDLEIGRPVQAMLAQAGTVTDALEEWDEAAVEWKYDGARI
QLHYDPAGPGGPDGDSNGETHVFSRNMEAVTDALPEVVEFADEHLDGPAILDGEVVAIDD
DGNPLPFQEVLKRFRRKHDVAKARENVSVRPVFFDCLHADGDDLLEEPLVERHNQLESVL
AMGPQQEPEEIDGFSLLWVTDNPDEIEAVDADALEAGHEGIMLKNPDSAYSPGRRGKNWQ
KRKPDVETLDCVVTGAEWGEGRRATFLGTFELSVRDGDDLETVGKVATGITDEKLEELTE
LLEPHIVAEDGTAVELEPAVVFEVGYEEIQTSPTYSSGYALRFPRFLGVRYDKDTAGAET
LERLETLFES
NT seq 1833 nt NT seq  +upstreamnt  +downstreamnt
atggagttcgccacgttcgcagaccgcgccgccacgatcgaggccgaatccgcggatctc
gagatcgttgcccacgtccgcgacctgctcgcagaggccggcgacgatctcccaatcgtc
gcccggttcgtccagggccgggtcttcccagcctgggactcgaccacgctcgatatcggg
ccaaacacctgctacgaggctatcgcccgtgcagcggggacgaacgtcgacgcagacgac
gtggaggagcgactcgccgaccgcggcgaaatcggtgcggtggcggcgagctacgacttc
ggcggccagcaggggttgggtgcgttcatgagcggcggtggcagtggcgctggtggtgct
gtcgacaacaatgacgaccaggacgaccgcaacaacggcggcaacggcagcaacagcggc
aacgacagcaacagcagcaacgacagcaacagcagcaacggcaccggcgacctcaccgtc
cgcgaaataaacgacacccttaccgacctcgcggccgccgaaggctcgggcagccaagac
cggaaggtcgacctcctcttcgggctgttcaaccgctgctcgagcgacgaagcgcgctac
ctcgctcgcctcgtcctctccgaaatgcgcatcggcgtcggcgagggtaccgtccgggac
gccatcgccgaggccttcgaggttccccaagagccggtcgaacgcgcactccaggtctcg
aacgactacggccaggtcgcggaaaccgcccgcgaggacggcgtcgacggactcgacgag
atcgacctcgagatcggtcgcccagtccaggccatgctcgcgcaggcggggacggttacg
gatgcactcgaggagtgggacgaggctgcggtcgagtggaagtacgacggggcgcgaatc
cagttacactacgatccagcaggccctggcggtccagacggcgacagcaacggcgagacg
cacgttttctcccggaacatggaagcggtcaccgacgcactcccggaggtcgtcgagttt
gccgacgaacacctcgacggccccgcgattctggacggcgaggtcgtcgcgattgacgac
gatggcaaccccttgccgtttcaggaggtgctcaagcgcttccggcgcaagcacgacgtg
gcgaaagcccgcgaaaacgtctctgttcgcccagtcttcttcgactgtctccacgccgac
ggcgacgacctcctcgaggagccactggtcgagcgacacaaccaactcgagtcggtgctc
gcgatgggcccccagcaagaacccgaagagatcgacggcttctcgctgctgtgggtcacc
gacaaccctgacgaaatcgaggccgtcgacgcggacgcactcgaggccggccacgagggg
ataatgctcaagaaccccgattcagcgtactcgccgggccggcgcggaaagaactggcag
aagcgcaaaccggacgtcgagacgctcgactgcgtcgtcaccggtgcggagtggggcgag
ggacggcgggcgacgttcctcgggacgttcgagctctcggttcgcgacggcgacgacctg
gaaacggtcggcaaggtcgcgacgggcatcacggacgagaaactcgaggaattgacggaa
ctgctggaaccccacatcgtcgcggaggacggaacggcggtcgaactcgagccggccgtc
gttttcgaggttggctacgaggagatccagacgtcgccgacgtactcgtcgggctatgca
ctgcgattcccgcgattcctgggtgtacgatacgacaaggatactgcgggagcggagacg
ctcgagcgactcgagacgctgttcgaatcgtag

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