KEGG   Neisseria meningitidis alpha14 (cnl strain): NMO_1016
Entry
NMO_1016          CDS       T00954                                 
Symbol
vacB
Name
(GenBank) putative ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
nmi  Neisseria meningitidis alpha14 (cnl strain)
Pathway
nmi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nmi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NMO_1016 (vacB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nmi03019]
    NMO_1016 (vacB)
   03016 Transfer RNA biogenesis [BR:nmi03016]
    NMO_1016 (vacB)
Enzymes [BR:nmi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     NMO_1016 (vacB)
Messenger RNA biogenesis [BR:nmi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     NMO_1016 (vacB)
Transfer RNA biogenesis [BR:nmi03016]
 Prokaryotic type
  tRNA degradation factors
   NMO_1016 (vacB)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1 OB_Dis3
Other DBs
NCBI-ProteinID: CBA05934
UniProt: C6S725
Position
1048848..1051238
AA seq 796 aa
MSTVQMNKNIKSLNLREKDPFLSREKQRYEHPLPSREWIIELLERKGVPSKIESLARELS
ITEDEYVFFERRLKAMARDGQVLINRRGAVCAADKLDLVKCRVEAHKDGFGFAVPLMPTG
EGDFVLYERQMRGVMHGDIVTVRPVGIDRRGRCEGTVLDIVERAQSKVVGRFYMDRGVAI
LEPEDKRLNQSIVLEPDGVARFKPESGQVIVGEIEVYPEQNRPAVAKIIEVLGDYADSGM
EIEIAVRKHHLPHQFSEACAKAVKKIPDHVRKSDLKGRVDLRDLPLVTIDGETARDFDDA
VFAEKIGRNYRLVVAIADVSHYVRPDDAIDTDAQERSTSVYFPRRVIPMLPENLSNGICS
LNPNVERLCMVCDMVITYAGNIKEYRFYPAVMRSHARLTYNQVWKWLSGGIGHPFKAQID
TLYKLFKILQKKRFERGAVEFDSIETQMLFDDNGKIEKIVPVVRNDAHKLIEECMLAANV
CAADFLLKNKHTALFRNHLGPTPEKLAALREQFGLLGLQLGGGDNPSPKDYAALAGQFKG
RPDAELLQVMMLRSMQQAVYEPHCDGHFGLAYEAYAHFTSPIRRYPDLTVHRAIKAVLNQ
QTYTPKKSWQALGVHTSFCERRADDASRDVENWLKTYYMRDKVGEIFEGKISGVANFGIF
VTLDDIHIDGLVHISDLGEDYFNFRPEIMAIEGERSGIRFNMGDRVAIKVARADLDDGKI
DFVLIAEGSGRGRKVKSSASAKPAGTAGKGKPKTAAEKKTARGGKVRGRGASAAAESGKK
AKKPVPIKVKKRKGKS
NT seq 2391 nt   +upstreamnt  +downstreamnt
atgtcaacagtccaaatgaataaaaatattaaatctttaaatttacgggaaaaagacccg
tttttaagtcgtgaaaaacagcgttatgaacatcctttgcccagtcgggaatggataatc
gaattgttggagcgcaaaggtgtgccttcaaaaatcgaatcgcttgcgcgcgagctgtcg
attacggaagacgagtatgtcttttttgaacgccgtctgaaggcgatggcgcgggacggt
caggttttaatcaaccgtcggggcgcggtttgcgcggcggacaaattggatttggtcaaa
tgccgcgtcgaggcgcataaggacggtttcggcttcgccgtaccgctcatgccgacgggc
gaaggagatttcgttttatacgaacgccagatgcgtggtgtcatgcacggcgacattgtt
accgtccgccctgtcggcatagatcgcagggggcggtgcgaagggacggttctggatatt
gtcgaacgcgcgcaaagcaaagttgtcggtcgtttctatatggataggggcgtggcgatt
ttggagccggaagacaagcgtctgaaccaaagcatcgtattggaaccggacggcgtggcg
cgtttcaaacctgaatccggtcaggtcatcgtcggcgaaattgaggtttatcctgagcaa
aaccggccggcagtggcaaaaatcatcgaagttttgggcgattatgccgacagcggcatg
gagattgaaattgccgtgcgcaagcatcatttgccgcaccaattcagtgaagcgtgtgcc
aaagccgtgaaaaaaattcccgaccatgtacgcaaaagcgatttgaaaggccgcgtcgat
ttgcgcgacctgcctttggtaacgattgacggcgaaacggctcgagattttgacgatgcg
gtgtttgccgaaaaaatcggacgcaattaccgtctggtcgtggcgattgccgatgtcagc
cattatgtccgccccgatgacgctatcgacacggacgctcaggaacgcagcaccagtgtt
tacttcccgcgccgcgtgattcccatgttgccggaaaacctgtccaacggcatctgctcg
ctcaatcctaatgtcgagcgtttgtgtatggtgtgcgatatggttatcacttacgcgggc
aatattaaagaataccgcttctaccccgccgtgatgcgctctcatgcccgcctgacctac
aaccaagtttggaaatggctttcaggcggcatcgggcatccgttcaaagcccaaatcgac
acgctttacaaactcttcaaaatccttcagaaaaagcgtttcgaacgcggggcggtggag
tttgacagcatcgaaacccaaatgcttttcgacgacaacggtaaaattgaaaaaatcgtc
cccgttgtccgcaacgatgcccacaagctgattgaagaatgtatgttggcggcaaacgtt
tgcgcagcggattttctgttgaaaaacaagcataccgcattgttccgcaaccatttgggg
cccacgcccgaaaaactcgccgccttgcgcgagcagttcggtctgttggggcttcaactt
ggcggcggcgacaacccgtcgccgaaagactatgccgcgcttgccggacagttcaaaggc
aggccggatgccgaattgctgcaagtcatgatgttgcgctccatgcaacaggcggtttac
gaaccgcattgcgacggacactttggtcttgcctacgaagcatacgcccacttcacctcg
cccatccgccgctatcccgacctgaccgtacaccgcgccatcaaagccgtgttgaatcag
caaacctacacgccaaaaaaaagctggcaggctttgggcgtgcatacctcgttctgtgag
cgccgtgccgacgacgccagccgcgacgtggaaaactggctgaaaacctactatatgcgt
gacaaagtcggcgaaatatttgaaggcaaaatttccggggtggcaaattttggaatattt
gtcactttggacgatatccatatcgacggtctggtgcatatcagcgatttgggcgaagac
tatttcaacttccgccccgaaatcatggcaatcgaaggtgaacgcagtggcatccgtttc
aatatgggcgacagggttgccattaaagtggcccgtgccgatttggatgatggaaaaatc
gattttgtcctgattgccgaggggagcggcagagggcggaaagttaaatcatccgcgtct
gccaaaccggcagggacggcggggaaagggaaaccgaaaaccgccgccgagaaaaaaaca
gcccgaggcggcaaagtaaggggaaggggcgcgtctgccgccgcagaatcggggaaaaag
gcaaagaaaccggttccgattaaggtaaaaaaacggaaaggcaaatcataa

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