KEGG T04041: NITMOv2

Nitrospira moscoviensis: NITMOv2_3246

Entry

NITMOv2_3246      CDS       T04041

Symbol

rtcB

Name

(GenBank) tRNA-splicing ligase RtcB

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

nmv Nitrospira moscoviensis

Brite

KEGG Orthology (KO) [BR:nmv00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:nmv03016]
    NITMOv2_3246 (rtcB)
Enzymes [BR:nmv01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     NITMOv2_3246 (rtcB)
Transfer RNA biogenesis [BR:nmv03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    NITMOv2_3246 (rtcB)
Prokaryotic type
   tRNA splicing ligases
    NITMOv2_3246 (rtcB)

SSDB

Motif

Pfam:

RtcB

Other DBs

NCBI-ProteinID:

ALA59641

UniProt:

A0A0K2GFB1

Position

complement(3049623..3051074)

AA seq 483 aa
MKLNTSMRVDRISDAVWEIAPSEKSGMLVPARIYATPTILEAMDEGVFEQVTNVACLPGI
RRYALCMPDGHWGYGFPIGGVAAFDVRSGIISPGGVGYDVNCGMRLIRTDLTRSEVQPHL
ERLMTELFRRVPAGVGSSGFVRLNRTSFEDVMREGARWCIAQGYGWHQDLERIEEGGCLA
GADPSKISDHAVNRGINQLGTLGAGNHYLEVQVVENARVFDRETAAAFGITGHDQIVVMV
HCGSRGFGHQVASDYLNVFEKAMRRYGMTVKDQQLACAPFRSEEGQDYFAAMNCAANAAF
ANRQVITHRIREAFADVFGKSAEELGMELVYDVAHNIAKVERYPEGELVVHRKGSTRALG
PGSPALPERYRKTGQPVICGGSMETGSYLLAGTEGAMRETFASTMHGSGRTMSRGQAKKA
VRGEQVQQQMKRQGILVKAVSMSGLAEEAGFAYKNISEVVASVDRAGITKTVAELRPIGN
IKG

NT seq 1452 nt +upstreamnt +downstreamnt
atgaaactcaacacatcaatgagagtcgaccgcatctcggacgcagtctgggagatcgcc
ccgtcggagaaatccggcatgctggtgccggcgcgcatctacgccacgccgacgattctc
gaagcgatggacgaaggcgtcttcgagcaagtcacgaatgtggcgtgcctgccgggcatc
cggcgctatgcgctctgcatgccggacggtcattggggctacggctttccgatcggcggc
gtcgcggccttcgatgtgcgttcagggatcatctcaccgggaggggtgggctacgacgtc
aactgcggcatgcggctgatccggaccgatctcacgcgaagcgaggtgcagcctcacctc
gaacggttgatgaccgaattgttccgccgggtgcccgccggcgtgggttcgagcggcttc
gtccggctgaatcgcacatcgttcgaggatgtgatgagggaaggggctcgctggtgcatc
gcccagggatacgggtggcatcaggatctcgagcggatcgaagaaggcggctgtcttgcg
ggagccgatccgtccaagatcagcgatcatgcggtgaaccgcggaatcaaccagctcggg
acgttgggggccggcaaccactatttggaagtgcaggtcgtcgagaacgcacgggtcttc
gaccgggagacggcggcggccttcggcatcacgggccacgatcagatcgtcgtgatggtc
cattgcggctcccgcgggttcggacaccaggtggcgagcgactacctcaacgtctttgag
aaagccatgcggcgctacggcatgaccgtcaaggaccagcagttggcctgcgcgccgttc
cggtccgaagaaggccaagactacttcgccgcgatgaactgcgccgcgaacgcggccttt
gccaatcgccaggtcatcacgcatcggatccgcgaggccttcgccgacgtcttcggcaag
tcggccgaagagctgggcatggagctcgtctatgacgtcgcgcacaacatcgcgaaggtc
gagcggtatcccgagggcgagttggtggtgcatcgcaagggatcgacgcgggcgctcggg
cccgggagcccggcgctgccggaacgctaccggaagaccggccagccggtgatctgcggg
ggctcgatggagaccggctcgtatctgttggccggcaccgaaggcgcgatgcgcgagacg
tttgcgtcgaccatgcacggctccggccgtacgatgtcgcgcggacaggccaagaaggcg
gtccgcggcgagcaggtgcagcaacagatgaaacggcagggcatcctcgtcaaggcggtc
tccatgtcggggctcgccgaggaagcgggcttcgcctacaagaacatttcggaggtggtg
gcgtcggtcgaccgcgcaggaattacaaaaacagtggcggaattgcggccgatcggcaat
ataaagggctag

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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