KEGG   Nipponia nippon (crested ibis): 104008583
Entry
104008583         CDS       T05756                                 
Symbol
HDAC2
Name
(RefSeq) histone deacetylase 2
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
nni  Nipponia nippon (crested ibis)
Pathway
nni03082  ATP-dependent chromatin remodeling
nni03083  Polycomb repressive complex
nni04110  Cell cycle
nni04330  Notch signaling pathway
nni04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:nni00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    104008583 (HDAC2)
   03083 Polycomb repressive complex
    104008583 (HDAC2)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    104008583 (HDAC2)
   04350 TGF-beta signaling pathway
    104008583 (HDAC2)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    104008583 (HDAC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:nni03036]
    104008583 (HDAC2)
Enzymes [BR:nni01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     104008583 (HDAC2)
Chromosome and associated proteins [BR:nni03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     104008583 (HDAC2)
   HDAC complexes
    Sin3A-HDAC complex
     104008583 (HDAC2)
    BRAF-HDAC complex
     104008583 (HDAC2)
    REST complex
     104008583 (HDAC2)
    SHIP complex
     104008583 (HDAC2)
    MiDAC complex
     104008583 (HDAC2)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     104008583 (HDAC2)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    104008583 (HDAC2)
  Chromatin remodeling factors
   NuRD complex
    104008583 (HDAC2)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 104008583
NCBI-ProteinID: XP_009458757
Position
Unknown
AA seq 458 aa
MKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSK
QMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASG
FCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTG
DLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGD
RLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELP
YNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAIPEDAV
HEDSGDEDGEDPDKRISIRASDKRIACDEEFSDSEDEGEGGRRNVADHKKGAKKARIEED
KKETEDKKADVKEEDKSKDSSGEKTDAKGAKSEQLSNP
NT seq 1377 nt   +upstreamnt  +downstreamnt
atgaaaccccataggatccgaatgacccacaacttgctgctaaattatggcttgtacaga
aaaatggaaatttaccgaccccacaaagctactgctgaggaaatgaccaagtaccatagt
gatgaatacattaaatttctccgatcaataaggcctgacaatatgtctgagtacagcaag
caaatgcagagatttaatgttggggaagattgtcctgtatttgatggcctgtttgagttt
tgtcagctgtcaactggaggctctgttgctggggcggtaaaattgaacagacaacagaca
gacatggctgttaactgggctggaggacttcaccatgccaagaaatcggaggcatctggt
ttctgttatgtcaatgatatcgtgcttgccatccttgagttactgaagtatcaccaaaga
gtgttgtatattgatattgatatccatcatggtgatggtgttgaagaagcattttatacc
acagatcgtgtcatgacagtatcattccataagtacggtgaatattttccgggcacaggg
gaccttagggacattggtgctggaaaaggcaaatactatgctgtcaactttccaatgagg
gacggtatagatgatgaatcatatggacagatattcaaaccaattatatccaaagtaatg
gagatgtaccagcccagtgctgtggtattacagtgtggagcagattcactgtctggtgac
aggctgggatgctttaatcttactgttaaaggtcatgctaaatgcgtggaagttgtaaag
acttttaacttgccattgctgatgttaggaggaggaggatatactattcgtaatgttgct
cgatgctggacgtatgaaactgctgttgccttagattgtgaaattcctaatgagctgcca
tacaatgactactttgagtatttcggaccagacttcaagcttcatattagtccttcgaat
atgactaatcagaatacaccagaatatatggagaagatcaagcaacgcttgtttgaaaac
ttgcgcatgttacctcatgcacctggtgtacagatgcaggccattcctgaagatgctgtt
catgaagatagtggagatgaggatggagaagatccagacaaacgcatttctattcgagca
tctgataagcgcatagcctgtgatgaagaattttcagattctgaagatgaaggggaaggt
ggacgacgaaatgttgcagatcataagaaaggagcaaagaaagccaggatagaggaagac
aaaaaagagacagaggacaaaaaagcagatgttaaggaggaggataaatccaaggacagc
agtggtgaaaagacagacgccaaaggagcaaaatcagaacagctcagcaatccttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (16)   

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