KEGG   Nipponia nippon (crested ibis): 104012821
Entry
104012821         CDS       T05756                                 
Symbol
SHFM1
Name
(RefSeq) 26S proteasome complex subunit DSS1
  KO
K10881  26 proteasome complex subunit DSS1
Organism
nni  Nipponia nippon (crested ibis)
Pathway
nni03050  Proteasome
nni03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:nni00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03050 Proteasome
    104012821 (SHFM1)
  09124 Replication and repair
   03440 Homologous recombination
    104012821 (SHFM1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nni03019]
    104012821 (SHFM1)
   04131 Membrane trafficking [BR:nni04131]
    104012821 (SHFM1)
   03051 Proteasome [BR:nni03051]
    104012821 (SHFM1)
   03400 DNA repair and recombination proteins [BR:nni03400]
    104012821 (SHFM1)
Messenger RNA biogenesis [BR:nni03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX-2 complex
     104012821 (SHFM1)
Membrane trafficking [BR:nni04131]
 Exocytosis
  Tethering complex
   Exocyst complex assembly proteins
    104012821 (SHFM1)
Proteasome [BR:nni03051]
 Eukaryotic proteasome
  Regulatory particles
   PA700 (19S proteasome)
    non-ATPase subunits
     104012821 (SHFM1)
DNA repair and recombination proteins [BR:nni03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Other HR factors
     104012821 (SHFM1)
SSDB
Motif
Pfam: DSS1_SEM1
Other DBs
NCBI-GeneID: 104012821
NCBI-ProteinID: XP_009463503
Position
Unknown
AA seq 81 aa
MGLGPPKGLSIINCITKFLDAVMLCGIRRCLFSVEENWTGLDEDEDAHVWEDNWDDDNVE
DDFSNQLRAELEKHGYKMETS
NT seq 246 nt   +upstreamnt  +downstreamnt
atggggctaggtccaccaaaaggcttgagtattataaactgcatcaccaaatttttagat
gctgtgatgctttgtggaattcgaagatgtcttttctcggtggaggaaaactggactggt
ttagatgaagatgaagatgcgcatgtctgggaagacaattgggatgatgacaatgtggaa
gatgatttctccaatcagttaagagcggaattagaaaaacatggatacaagatggaaacc
tcatag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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