KEGG   Nipponia nippon (crested ibis): 104023104
Entry
104023104         CDS       T05756                                 
Symbol
PARP4
Name
(RefSeq) poly [ADP-ribose] polymerase 4
  KO
K10798  poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
Organism
nni  Nipponia nippon (crested ibis)
Pathway
nni03410  Base excision repair
nni04210  Apoptosis
Brite
KEGG Orthology (KO) [BR:nni00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    104023104 (PARP4)
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    104023104 (PARP4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nni03032]
    104023104 (PARP4)
   03036 Chromosome and associated proteins [BR:nni03036]
    104023104 (PARP4)
   03400 DNA repair and recombination proteins [BR:nni03400]
    104023104 (PARP4)
Enzymes [BR:nni01000]
 2. Transferases
  2.4  Glycosyltransferases
   2.4.2  Pentosyltransferases
    2.4.2.30  NAD+ ADP-ribosyltransferase
     104023104 (PARP4)
DNA replication proteins [BR:nni03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    104023104 (PARP4)
Chromosome and associated proteins [BR:nni03036]
 Eukaryotic type
  Centrosome formation proteins
   Centriole proteins
    104023104 (PARP4)
DNA repair and recombination proteins [BR:nni03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     104023104 (PARP4)
SSDB
Motif
Pfam: VIT PARP VWA_3 VIT_2 VWA VWA_2 BRCT_2 BRCT VWA_CoxE PARP_reg PTCB-BRCT
Other DBs
NCBI-GeneID: 104023104
NCBI-ProteinID: XP_009475160
Position
Unknown
AA seq 1693 aa
MAIFANCEFFIKVKYLATQEKSKLKACIKENGGVVNFVLNHKSTHVLVDTADVLSCRDLK
TIQKYQLPVLFADFIWKSVEKGKLLQIDAYKVNKSQDDTSDQRPASQDVEDLSSAENKNA
TKKNETKNSNLTVTEDSERRIESKVGTFRFYNENDQDTPFFPQDFEVAKYSVLEKVSLSK
SKDFVVIELQCSQKRYEFPFRLYAHFSASNGTKNNKQFITKTAEEIREKYKTFITDLKSQ
DFLLREAFPPEAESLASTKLQKLLLEEAIHSSAVCQEVSDFVELIWAEAVGHLDSLLLES
VNNISLNDVSKAEGILLQVKNALHEGAGEVALKEMMTEFYQLIRHKTGIDYKVSKKLLSR
KQDLCQLIRDMLNIHEANMSCPNPSSLAKYRALRCKIEAVDSESYECFNVEQQVLKNNYN
ECPVRILQVYRVGRITETAEFLSSLGNVRSLFHASSVRNFMGILSRGLLMPKVVVEGHGL
ERTDTGNLGSGIYFSDSVSTSIKYSSPSEMDGTRLLAVCDVALGSCLDLYERDYSLNNAP
SGYDSVHGVRKTADMSSDFEDDEFVVYKTCQVKIRYVVKFCLAEDQIKRFQPATGVELEQ
HNNEPEPQCHLQHESYALPNANLSNPVKTGLQDRLGNPVPLEGVYIKARIIDFVAQVVMF
QTYTNQNSKPIEAKYVFPLDDKAAVCGFEAFINGKHIIGEVKEKKQAHREYRKAISQGDG
AYLMDQDAPDIFVISVGNLPPNSTVVIKITYITELSFQHGCITFHMPASVSPWQQDKALN
ENMQDTIKKVCVKELNRQKNGFSVDMSIEMPSSIERIHSWTHKLKIKRTDCKAVIKTVEN
SSLDVSGFVLDIWISQVYLPRMWVEKHPNKMSEACMLVFQPEFETAFEEEQLSSEIIILL
DCSNSMAGSALHQAKQIALRVLELFCFRQRVNVVKFGTNFIEFSSFSMNTISDLPSLKEF
ITSATATLGNTDLWKTLRYLSLLFPSQGHRNILLISDGHIQNESMTFQIVKDNVQHTRLF
TCGVGSTANRHMLRSLSQYGAGAFEYFDPKSKYNWEAKIQSQVSRIFSPGCSSVSIKWQQ
FDTGAPEPKQAPAQIQSLFNNERLLVYGFIPHCTQATLKAVINDKELQTVVSTTELQKTT
GTVLHKLAARAFINDYEDGILHENETEHEMKKQILKNMIIHLSLENSIISQFTSFVAVEK
RDANETCSADAPNILEIIAQEDVDFLPYMDWDQKSMASGSLFSEEFAFDAHAYSPAVGVF
HSSDLLSEKAEPESFQFQPEKVPGSQKSISPKNMAQGFGNVPELQSSVCSLKSNFCFGSA
VAKETSSGTSSHSPHDLPLLRVAEPCLLFGFKPKLGEGIDLTQQKPLQTPALTKSGVGVA
VPEPAPPPPRSFQKPVGAMKQVNSSCVAPMQGLGLFGSSTPTRTNSEKTNVEKQVIPKSP
VSQANRKEVLPLLGCQRKGVRQHDVTAPEGAFTEGFKVAEQSRCFTTTEKENIPQRIELT
SVNWKETFALQNQDGSWNLSPQLGKILKFDVDHLINNCLIRKGIQSLGPNRKEKLLQLIA
TLLVLQFIRCTKELKGIVFKTLMKLDDSSNSSDVHWAFELIKKATEWVRKVERQFPSICY
RLELGKDWDSATKKILASPSGGPGTPLYRGIQRALLFLFRRAGPTRHRNLECLRSPAATS
LPRRRATAPGAQT
NT seq 5082 nt   +upstreamnt  +downstreamnt
atggcaatctttgcaaactgtgagttcttcattaaagttaaatacttagccactcaggag
aagagcaagctgaaagcatgcataaaagaaaatggtggagtagttaattttgtccttaat
cacaagagtacacatgttcttgtggatactgctgatgtcctcagctgtcgtgatctgaaa
actattcagaagtatcagcttcctgttttatttgcagattttatttggaaatcagttgaa
aaggggaagcttttacagattgatgcatataaggttaataaatcacaggacgacacttct
gaccaaaggccagccagccaggatgtggaagacttgtcatctgctgaaaataaaaatgcc
acaaagaaaaatgaaactaagaattccaaccttactgttactgaagacagtgagagaaga
attgagtccaaagtggggacttttagattttacaatgaaaatgatcaagatactcctttt
tttccccaagattttgaagttgcaaaatacagtgtccttgaaaaagtaagcctttctaaa
agcaaagattttgtagttattgaattacagtgttcccaaaagcgttatgagtttccgttt
cgactatatgcacacttcagtgcatcaaatggaacaaagaataataaacaattcataact
aagactgctgaagaaataagagaaaagtacaagacttttattacagacttgaagagccag
gatttcctgctcagagaagcttttcctccagaagcagaatctttagcttctacaaaattg
caaaagttacttctagaagaagccatccattcaagtgctgtatgtcaggaagttagtgat
tttgtggaattgatctgggcagaagctgttggccacctggatagtttactgcttgaatca
gtaaacaacataagcctaaatgatgtgagcaaagcagaaggtattttactccaagtaaag
aatgcactgcatgagggagctggcgaggtggcactaaaagagatgatgacggaattctat
caacttatacgtcacaaaactggaatagactataaagtttccaaaaaactgttatctaga
aaacaggacctgtgtcagcttatcagagacatgcttaatatacatgaagcaaatatgtca
tgcccaaacccatcatctttggccaaataccgggctctgaggtgcaagattgaagctgtt
gactcagagagttatgaatgtttcaatgttgaacaacaagtgttaaaaaacaattacaat
gagtgtccagtgagaattttacaagtgtatagggttggcagaataactgaaacagcagaa
tttctgagcagtcttggaaacgttcgatccttattccatgcatcatctgtgcgcaacttc
atgggaattctttccagaggactcctgatgccaaaagtggttgttgaaggtcatggcctg
gaaagaactgacactgggaatctgggcagtggcatttacttcagtgattctgttagcacc
agtattaagtattcctcacccagtgaaatggatggaacacggctcctggcagtttgcgac
gtggcacttggatcttgcttagatttgtatgaacgagattattcactaaataatgcacca
tcaggttatgacagcgtgcatggagtccgtaaaacagcagacatgtcttcagactttgag
gatgatgaatttgtcgtgtataaaacctgtcaggttaaaattagatatgttgttaagttt
tgccttgctgaagatcaaataaaacgatttcagcctgcaactggggtggaactggagcaa
cataacaatgagccagagccgcaatgtcatttacagcatgagagctatgcattaccaaat
gcaaatctttcgaatcctgtaaaaaccggtcttcaggacagattgggaaatcctgtccct
ctggaaggtgtttatatcaaggcaaggataatagactttgtagcgcaggtagtaatgttt
cagacctacaccaatcaaaacagtaaaccaattgaagctaaatatgtctttcctttggat
gataaagctgctgtttgtggatttgaagcttttatcaatggaaaacacatcattggagag
gttaaagaaaagaaacaagcacacagggaatatcggaaagctatcagtcagggtgatgga
gcttatctgatggaccaggatgcaccggatatttttgtaataagtgttggaaacttacct
ccaaattctacagttgtgatcaaaatcacctatatcactgaactgagttttcagcatggt
tgtatcacctttcatatgcctgcttctgtgtcaccatggcaacaggacaaagcattaaat
gaaaacatgcaggatacaataaaaaaggtttgtgttaaagaattaaatcgacagaaaaat
ggattttctgtggatatgtctattgagatgccatctagtattgaacgcatacatagttgg
acacataaacttaaaataaagagaacagactgcaaggctgtaattaagactgtggagaac
agctccttggacgttagtggctttgttctagatatctggatttctcaggtctacctacct
cgaatgtgggtagagaagcatcccaacaaaatgagtgaggcttgcatgcttgtattccaa
ccagagtttgaaacagcatttgaagaagagcagctgtccagtgaaattattattttatta
gactgctcgaattctatggcaggttcagctctacaccaagcaaagcagattgctttacgt
gttttggaactattttgtttcagacaaagagtgaatgtagtcaaatttggcacaaatttc
atagaattttcttctttttcaatgaacaccataagtgatttgccatcactgaaagagttt
attacatctgctactgcaacattgggaaacactgatttatggaagaccttacgttactta
agtctgctatttccttctcaaggacaccgtaacattcttcttatatcagatggacacatt
cagaatgagagtatgaccttccagattgtgaaagataatgtccaacatacaaggttattt
acatgtggtgttggttccacagcaaatcgacacatgctgagatctttgtcccaatatggt
gctggagcatttgaatactttgacccgaaatcaaagtataactgggaggcaaagatacag
agccaggtatctagaatattttctccaggatgcagttcagtttctattaaatggcagcag
tttgatacaggtgcaccagagccaaagcaggctcctgctcaaatacagtctttatttaac
aatgagagacttcttgtctatggattcatccctcactgtactcaggccaccttaaaagca
gtaataaatgacaaagaactacagactgtggtgtcaactactgaactacagaagacgaca
ggaacagtactgcacaaactcgcagcaagagctttcattaatgactatgaagatgggatt
cttcatgagaatgaaacagaacatgagatgaagaaacaaatcttgaaaaacatgattatt
cacctcagcttggagaactcaattataagccagtttacaagcttcgttgcggttgagaaa
agggatgctaatgaaacttgttctgctgatgctccaaacatcctggaaattatagctcaa
gaagatgtagattttttaccttacatggactgggaccaaaagtcaatggcatctggctcc
ttattttcagaagaatttgcctttgatgcccatgcatattccccagcagtaggcgttttt
cattcatctgatttgctgagtgagaaagctgaacctgaaagtttccagtttcaacctgaa
aaagttcctggtagtcagaagagcatctcaccaaaaaacatggcgcagggctttggaaat
gttcctgaacttcaaagcagcgtttgcagtctcaaatcaaatttctgttttggtagcgct
gtcgcaaaggagacatcatctggaacaagctcacattcaccacatgaccttcctctgctg
cgagttgctgaaccctgcttgttatttggttttaaacctaagctaggagaaggaattgat
ctgactcaacaaaaaccacttcagacacctgcacttacaaaatcaggggttggtgtggct
gttcctgaacctgctcctcctcctccccgttcttttcaaaaaccagtgggagccatgaaa
caagttaattcttcttgtgttgctccgatgcagggtttaggattgtttggttcatctacc
cctacacgcacaaattctgaaaagactaatgttgaaaaacaagttattcccaaatctcct
gtttctcaagctaatagaaaagaagtcttgccactgttggggtgtcagagaaagggagta
cgtcagcatgatgttacggctcctgaaggagcatttactgaggggtttaaggttgcggaa
caatcaaggtgctttacaacaacagagaaagaaaacattccacagagaattgagttgact
tctgtaaactggaaagaaacttttgcgctccaaaatcaggatggctcttggaatctcagt
ccacagttgggaaaaatcttgaaatttgatgtcgatcatttaattaacaattgccttatt
agaaaaggcattcagtcacttggcccaaatcgaaaagaaaagctactgcagttgattgct
actcttcttgtgctacagttcatacgctgcacaaaggaattgaaagggatagttttcaaa
acactgatgaaactggatgattcatctaattcaagtgatgttcattgggcttttgagctg
atcaagaaagcaacagagtgggtaagaaaagttgagaggcaatttccatctatttgctat
cgacttgaacttgggaaagactgggattctgccaccaagaagatactggcctcacccagc
ggagggccaggaacacctttgtaccggggtattcagcgcgctcttctctttctgttccga
cgagccgggcccacccggcaccgtaacctcgagtgcctccgctcaccggcagccacctcc
cttccccggaggagggctactgcgccgggcgcccaaacctga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (11)   
   Pfam (11)   
All databases (25)   

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