KEGG   Nelumbo nucifera (sacred lotus): 104604159
Entry
104604159         CDS       T04131                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
nnu  Nelumbo nucifera (sacred lotus)
Pathway
nnu03030  DNA replication
nnu03410  Base excision repair
nnu03420  Nucleotide excision repair
nnu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nnu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    104604159
   03410 Base excision repair
    104604159
   03420 Nucleotide excision repair
    104604159
   03430 Mismatch repair
    104604159
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nnu03032]
    104604159
   03036 Chromosome and associated proteins [BR:nnu03036]
    104604159
   03400 DNA repair and recombination proteins [BR:nnu03400]
    104604159
DNA replication proteins [BR:nnu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    104604159
  DNA Replication Termination Factors
   ELG1-RFC complex
    104604159
Chromosome and associated proteins [BR:nnu03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    104604159
DNA repair and recombination proteins [BR:nnu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     104604159
  Check point factors
   HRAD17(Rad24)-RFC complex
    104604159
SSDB
Motif
Pfam: DNA_pol3_delta2 AAA Rad17 Sigma54_activ_2 DNA_pol3_delta DUF815 RuvB_N AAA_22 AAA_5 Mg_chelatase AAA_29 ABC_tran RsgA_GTPase AAA_2 AAA_16 AAA_24 nSTAND3 T2SSE RNA12 nSTAND1 NB-ARC AAA_23 TsaE ATPase_2
Other DBs
NCBI-GeneID: 104604159
NCBI-ProteinID: XP_010266717
UniProt: A0A1U8AGG3
Position
Un
AA seq 354 aa
MLWVDKYRPKSLDKMLVHEEVAKNLKKLVTEQDCPHLLFYGPSGSGKKTLIMAVLRQMFG
AGAEKVKLENKTWKINAGSRTIDLELTMLSSTHHVELNPSDAGFQDRYIVQEIIKEMAKN
RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR
CLNVRINAPKEDEIISVLEFIGKKEGLQLPPGFAARIAAQSNRSLRRAILSFETCRVQQY
PFTNNQVILPMDWEQYISEIASDIMQEQSPKRLFLVRGKLYELLINCIPPVIILKRLLSE
LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggtagacaaatacaggccgaaatccctcgacaagatgctagttcacgaagag
gttgccaagaatctcaagaaactggtcacagagcaggactgccctcacctgctgttctac
gggccttcaggttccggcaagaaaaccctaatcatggccgttcttagacagatgtttggc
gctggtgccgagaaggtgaaattagaaaacaagacatggaaaatcaatgctgggagtaga
actattgatctggaattgaccatgttatcaagcacccaccacgtggaactgaatcccagt
gatgcaggtttccaggatagatatattgttcaagagataatcaaggaaatggcaaaaaat
aggccaattgacacaaaaggaaagaaagggtacaaagtcctagtgctaaatgaggttgac
aagctctcaagagaagcacaacactcacttcggagaacaatggagaaatatagtgcatcg
tgtcggttaattctatgctgcaatagttcctcaaaagttacagaagcagttcgttctcgc
tgtttgaatgtgagaataaatgcaccaaaagaagatgagattattagtgtattggagttt
attggcaaaaaggaagggctacaacttccacctggttttgcagcccgcatagctgctcaa
tcaaaccggagtttgaggagggcgatcctgtcgtttgagacttgtcgagtccaacagtac
cctttcacaaataatcaagtaatactgcccatggattgggaacagtatatttctgaaata
gcatctgacataatgcaggagcagagccccaaaaggctgtttttagttcgtgggaagttg
tatgagctacttattaattgtattcctccagtgatcattttgaagaggttgctttctgaa
ttgttgaagaagttggatgctgaacttaagcatgaggtgtgccattgggcagcctattat
gaacacagaatgcgactgggtcagaaggcaatatttcacattgaagcatttgttgcaaaa
ttcatgagcatctataaagcattcctcattgcaacattcggatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (24)   
   Pfam (24)   
All databases (52)   

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