KEGG   Nelumbo nucifera (sacred lotus): 104609135
Entry
104609135         CDS       T04131                                 
Name
(RefSeq) RNA polymerase II transcription factor B subunit 4
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
nnu  Nelumbo nucifera (sacred lotus)
Pathway
nnu03022  Basal transcription factors
nnu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:nnu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    104609135
  09124 Replication and repair
   03420 Nucleotide excision repair
    104609135
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nnu03021]
    104609135
   03400 DNA repair and recombination proteins [BR:nnu03400]
    104609135
Transcription machinery [BR:nnu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     104609135
DNA repair and recombination proteins [BR:nnu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     104609135
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 104609135
NCBI-ProteinID: XP_010273663
UniProt: A0A1U8BBT0
Position
Un
AA seq 303 aa
MASITSKLYSDDVSLLVVLLDTNPFLWSGENTTTNSLSFPKFLTHVFSFLNSILLLNQLN
QVVVIATGLNSCDYIYDSSSSPTTVESLENGRMPALCSKLLQNLEEFLARDQELNKDESP
PGIASSLLSGSLSLALCYIQKVFRSGPLHPQPRILCLQGSSDGPEQYVAIMNAIFSAQRS
MVPIDACVIGAQHSAFLQQASYITGGVYLKPPQLDGLFQYLSTVFSTDLQSRSFLQLPKP
VGVDFRASCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQAHSSATTTSDRKRKT
TES
NT seq 912 nt   +upstreamnt  +downstreamnt
atggcatcaattacatcaaagttgtattcagatgacgttagtcttcttgtggttctactc
gacaccaacccttttctctggagcggggaaaacaccaccaccaattcgctttccttcccc
aaattcctcactcatgtcttttcatttctgaattccattctcctcctcaatcaactcaat
caagtggtagttattgccactgggctcaattcttgtgactacatttatgattcctcatca
tcgcccacaactgtagagagtttggagaatgggagaatgcctgcactttgctccaagttg
ctgcagaacttggaggaatttctggctagagatcaagagttgaacaaagacgagtcacca
cctgggattgcatcctcattgctgtcaggatcattgtctctggccctttgttatatacag
aaggtgttccgttctggaccgcttcatcctcagcctaggattttatgcctgcagggatcc
tcagatggacctgaacaatatgttgcaataatgaatgcaatattctcggcccaacgttcc
atggttcctattgatgcatgtgttataggggcccaacattctgcctttctgcagcaggct
tcttacataacagggggcgtctatctgaagcccccacaactggatggattgtttcagtat
ctttcgactgtattcagcactgatttacagtcccgcagcttcttacaacttcccaagcct
gtgggagtggactttcgtgcctcgtgtttttgccataaaaagaccattgacatgggctac
atctgttcagtttgcttatctatattctgtaagcatcacaagaaatgttcaacgtgtggg
tctgtctttggtcaggctcactctagtgctactacaacttcagacaggaagaggaagact
acagaatcctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (25)   

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