KEGG   Actinomadura parvosata subsp. kistnae: BKM31_41655
Entry
BKM31_41655       CDS       T04759                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
noa  Actinomadura parvosata subsp. kistnae
Pathway
noa03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:noa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BKM31_41655
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:noa03400]
    BKM31_41655
Enzymes [BR:noa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BKM31_41655
DNA repair and recombination proteins [BR:noa03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BKM31_41655
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_primase_S
Other DBs
NCBI-ProteinID: AQZ67100
UniProt: A0A1V0AA45
Position
complement(9294717..9295664)
AA seq 315 aa
MAADETRDGVDLTNLDQPLFDGAGATKRDLVDYLDAVRDRILPVLRERPLSVVRVRPGQE
PFMQKNLPKYAPAWVRSVSVWAEASRRQVTYALCDDRKTLLWFANQRAVEFHPALYAGGH
PTHLVLDLDPPEHDDSFALAVRGALLVRQALADMGLAGAVKTSGAKGVHVFVPVAEGTAM
DDLAAATRALAARAERLDPALATTAFIREDREGKVFLDSTRAGGATVVAAYSPRIRPGVP
VSFPLAWADLERVAPGDFTLRTAPGLLKGGDPWAEHMPAPQRLPADLVEEGHTIPVARVQ
AMHEGKRRARARRAE
NT seq 948 nt   +upstreamnt  +downstreamnt
gtggccgctgacgagacgcgcgacggcgtcgacctgaccaacctggaccagccgctgttc
gacggcgccggtgccaccaaacgcgacctggtcgactacctcgacgccgtgcgcgaccgc
atcctccccgtgctgcgcgagcgcccgctctccgtcgtgcgcgtgcgcccggggcaggag
ccgttcatgcagaagaacctgcccaagtacgcccccgcctgggtgcggtcggtgtcggtg
tgggcggaggcgtcgcgccggcaggtgacgtacgcgctgtgcgacgacaggaagacactg
ctgtggttcgccaaccagcgggccgtggagttccatccggccctgtacgccggcggccac
cccacccacctggtcctcgacctcgacccgcccgagcacgacgactccttcgcgctggcc
gtgcgcggcgcgctcctggtgcggcaggcgctggcggacatggggctggcgggcgcggtg
aagacgagcggcgccaagggggtgcacgtgttcgtgcccgtggcggagggcaccgccatg
gacgacctcgcggcggccacccgcgcgctggcggcgcgggccgagcggctggatccggcg
ctggccaccacggcgttcatcagggaggaccgcgagggcaaggtgttcctcgactccacc
cgcgcgggcggcgccacggtggtggccgcctacagcccgcgcatccggcccggcgtgccc
gtctccttcccgctcgcgtgggccgacctcgaacgggtggcgccgggcgacttcacgctg
cggacggcgccgggcctgctgaagggcggcgacccgtgggccgagcacatgcccgcgccg
cagcggctgcccgccgacctcgtcgaggaggggcacacgatccccgtcgcccgcgtccag
gcgatgcacgagggcaagcggcgcgcccgcgcccgccgcgcggagtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (22)   

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