KEGG   Actinomadura parvosata subsp. kistnae: BKM31_43920
Entry
BKM31_43920       CDS       T04759                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
noa  Actinomadura parvosata subsp. kistnae
Pathway
noa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:noa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BKM31_43920
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:noa03021]
    BKM31_43920
   03019 Messenger RNA biogenesis [BR:noa03019]
    BKM31_43920
Transcription machinery [BR:noa03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     BKM31_43920
Messenger RNA biogenesis [BR:noa03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BKM31_43920
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind AAA_25 TOBE AAA_22
Other DBs
NCBI-ProteinID: AQZ67491
UniProt: A0A1V0ABA8
Position
9758998..9760107
AA seq 369 aa
MSVHTIPEQRAAAPVRHVEGLLDVRDKSAFIRADHLPGPGDVRVTPEKVRQWGLRPGDHV
VAAFDGNRLLKVESVNGAASWLDRPQFDQLTPIHPDERLSVETPSLTTRVIDLFAPIGKG
QRGLIVAPPKAGKTMVLQALAAGISRNHPEAHLMVLLVGERPEEVTEMRAGIDGEIYAST
FDHPDRDHTALAELAIERAKRLVESGRDVVVLLDSLTRLGRAYNNIAPGGGRVLTGGIDA
RALYPPKRFFGAARNVENGGSLTILATALVDTGSRMDNNLYEEFKGTGNMELHLVRELAE
RRLFPAVDLDASGTRREELLMHPSEREIVWRLRRSLAGLDRQQALQALVDRLRSTSSNAA
FLMETAKAA
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgtctgtgcacaccattccagagcagcgtgccgccgcgccggtccgccacgtggaggga
ctcctggacgtacgcgacaagtccgcgttcatccgggcggatcacctgccggggccgggc
gacgtacgcgtcacccccgagaaggtccgccagtggggcctgcgccccggcgaccacgtc
gtcgcggccttcgacggcaacagactcctcaaggtcgaatcggtcaacggcgccgcctcg
tggctcgaccggccacagttcgaccagctcacccccatccatccggacgagcggctcagc
gtcgagacgccgtcgctcaccacccgggtcatcgacctgttcgcgcccatcggcaagggg
cagcgcggcctcatcgtggcgccgcccaaggccggcaagaccatggtgctgcaggcgctg
gccgccgggatctcccgcaaccaccccgaggcgcacctcatggtcctgctcgtcggcgag
cggcccgaggaggtcaccgagatgcgggccggcatcgacggcgagatctacgcctcgacc
ttcgaccaccccgaccgcgaccacaccgcactcgccgagctcgccatcgagcgggccaag
cgcctcgtcgagtccggccgcgacgtggtcgtgctgctcgactcgctgacccgcctcggg
cgggcctacaacaacatcgcgcccggcggcgggcgcgtcctgaccggcggcatcgacgcc
cgcgccctctacccgcccaagcgcttcttcggcgccgcccgcaacgtcgagaacggcggc
tcgctgaccatcctcgccaccgccctcgtggacacggggtcgcggatggacaacaacctg
tacgaggagttcaaggggacgggcaacatggagctgcacctcgtccgcgagctggccgag
cgccgcctcttccccgccgtggacctcgacgcctccggcacccggcgcgaggagctgctg
atgcacccgtcggagcgggagatcgtctggcggctgcgccgctcgctggccgggctggac
cggcagcaggccctccaggccctcgtcgaccggctccgctcgacctcctccaacgccgcc
ttcctgatggagacggccaaggccgcgtga

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