KEGG   Novosphingobium sp. Gsoil 351: GKE62_09430
Entry
GKE62_09430       CDS       T06443                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
nog  Novosphingobium sp. Gsoil 351
Pathway
nog03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:nog00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    GKE62_09430 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nog03021]
    GKE62_09430 (rpoB)
   03400 DNA repair and recombination proteins [BR:nog03400]
    GKE62_09430 (rpoB)
Enzymes [BR:nog01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     GKE62_09430 (rpoB)
Transcription machinery [BR:nog03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     GKE62_09430 (rpoB)
DNA repair and recombination proteins [BR:nog03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      GKE62_09430 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 MYO10_CC
Other DBs
NCBI-ProteinID: QGN54741
UniProt: A0A6I5WXM5
Position
complement(1966340..1970512)
AA seq 1390 aa
MATQPTTPVSASRSSAKKRIRKIFGDIHEVIAMPNLIEVQRESYEQFLRSDPATGYVSGL
EKTLRSVFPITDFAGTASLDIKKDGGYMLEPPKYDVTECRQRGITYAAPMKVTLTLATFE
VDHDTETKSLVDIKEQDVYMGDMPLMTENGTFVINGTERVIVSQMHRSPGVLFDHDRGKT
HSSGKYLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLHALGLDNEQILDYF
YNKVTWVRAEAGWRLPYVAEQWRGQKPTFDIIDGTSGEVVFAEGTKITPRMASKAEKDGL
KELLIPTEEIFARYAAHDLIDESTGRIWIEAGDEVGPENLEALDKAGVDRLVLLDVDNNT
GPWIRNTMKADKAEDRDQALADIYRVMRPGEPPTRETADALFAGLFFDPDRYDLSAVGRV
KLNMRLGLEVEDTITTLRTEDILSVVKELVDLKDGKGEVDDIDNLGNRRVRSVGELLENQ
YRVGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSE
VTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTFARVNK
YGFIETPYRKVSNSKVSSDVVYLSAMEEQKHVVAQASAETDADGRFVEDLISARDSGEFV
MAPRDNVTLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTG
MEETVARDSGAAIGALRGGIVDQVDATRIVIRASGDIEPGKSGVDIYTLQKFQRSNQNTC
INQRPLVKVGEVVEAGDILADGPSTELGELALGRNSLVAFMPWNGYNYEDSILISERIVK
DDVFTSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVHPGDILV
GKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLKLPPGVSGTIVEVRVFNRHGIEIDDR
TRAIQNEEIERLKKDSEDERNILNRATYNRLREMLVGQVVAAGPKAAKKGQVIDEAVLGE
VERHEWWKFAVADDARQTQLEAVRLQYDEAIKVINAKFEDRREKLERGDELAPGVLKMVK
VFVAVKRKLQPGDKMAGRHGNKGVISRILPAEDMPFLEDGTPVDVVLNPLGVPSRMNVGQ
IFETHLGWAARGLGQQITAALQEWRDANPNPEAAAPPSALVDRLKDIYGERYHDQIDART
PSEIVDMAELLKNGVPMGTPVFDGAREADVSAMLVKAGLDPSGQVTLYDGRTGDAFDRKV
TVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAY
TLQEMLTVKSDDVIGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELSSIDTS
EEDEWPQAAE
NT seq 4173 nt   +upstreamnt  +downstreamnt
atggccacccagcccaccacgccggtttcggcgagccgcagctccgccaagaagcgcatc
cgcaagatcttcggcgacatccacgaagtcatcgcgatgcccaacctgatcgaggtgcag
cgcgaaagctacgagcagttcctccggtccgaccccgccacgggctacgtctcggggctg
gagaagacgctgcgcagcgtgttcccgatcaccgacttcgccggcaccgccagcctggat
atcaagaaggacggcggctacatgctcgagccgcccaagtacgacgtcaccgagtgccgc
cagcgcgggatcacttacgccgcgccgatgaaggtcacgctgacgctcgccaccttcgag
gtcgatcacgacaccgagaccaagagcctcgtcgatatcaaggagcaggacgtctacatg
ggcgacatgcccctgatgacggagaacggcaccttcgtcatcaacggcaccgagcgcgtg
atcgtttcgcagatgcaccgttcgccgggcgtgctgttcgaccacgatcgcggcaagacg
cactcttcgggcaagtacctgttcgccgcgcgggtcatcccgtaccgcggctcgtggctc
gatttcgaattcgacgccaaggacatcgtcaacgtccggatcgaccgcaagcgcaagctt
ccggtcaccgcgctgctccacgcgctggggctcgataacgagcagatcctggattacttc
tacaacaaggtcacctgggtccgcgccgaagcgggctggcggctgccttacgtggccgag
caatggcgcggccagaagccgaccttcgacatcatcgacgggaccagcggcgaggtcgtc
ttcgccgagggcaccaagatcaccccgcggatggcaagcaaggccgagaaggacgggctc
aaggagctgctgatcccgaccgaggaaatcttcgcgcgctatgccgcgcacgacctgatc
gacgaatcgaccgggcggatctggatcgaggcgggcgacgaagtcggccccgagaacctc
gaggcgctcgacaaggcgggcgtcgatcgcctcgtcctgctcgacgtcgacaacaacacg
gggccgtggatccgcaacacgatgaaggccgacaaggccgaggatcgcgaccaggcgctg
gccgacatctaccgcgtgatgcgccccggcgagccgccgacgcgcgaaaccgccgatgcg
ctgttcgccggtctgttcttcgatcccgaccgctacgacctgtccgcggtcggccgggtc
aagctcaacatgcgcctcggcctcgaagtcgaggacacgatcaccacgctgcgcaccgag
gacatcctcagcgtggtcaaggaactggtcgatctcaaggacggcaagggcgaagtcgac
gacatcgacaacctcggcaaccgccgcgtgcgttcggtcggcgagctgctcgagaaccag
taccgcgtcgggctgctgcgcatggagcgcgcggtcaaggagcggatgagcagcgtcgac
gtctcgacggtgatgcccaacgacctgatcaacgccaagcccgcggtcgccgcggtgcgc
gagttcttcggttcgagccagctttcgcagttcatggaccagaccaacccgctttcggaa
gtcacccacaagcgccgcgtctcggcgctcgggccgggcggcttgacgcgcgagcgcgcg
ggcttcgaagtccgcgacgttcacccgacccactacggccggatctgcccgatcgagacg
cccgaaggcccgaacatcggcctgatcaactcgctcagcacgttcgcgcgggtcaacaag
tacggcttcatcgaaaccccgtaccgaaaggtttcgaacagcaaggtcagctcggacgtc
gtctatctctccgcgatggaagagcagaagcacgtcgtcgcgcaggcctcggccgaaacc
gacgccgacggccgcttcgtcgaggatctgatctcggcgcgcgacagcggcgagttcgtg
atggcgccgcgcgacaacgtgacgctgatggacgtttcgcccaagcagctcgtctcggtc
gccgcctcgctgatcccgttcctcgagaacgacgacgccaaccgcgcgctgatgggctcg
aacatgcagcgccaggcggtgccgctggttcgcgccgaagcgccgttcgtcggcaccggc
atggaagaaaccgtcgcgcgcgattcgggcgcggcgatcggcgcgctgcgcggcgggatc
gtcgaccaggtcgatgccacccgcatcgtgatccgcgcctcgggtgacatcgagcccggc
aagtcgggcgtcgacatctacacgctccagaagttccagcgttcgaaccagaacacctgc
atcaaccagcgcccgctggtgaaggtcggtgaagtggtcgaagccggcgacatcctcgcc
gacggtccctcgaccgagctgggcgaactggcgctgggccgcaacagcctcgtcgcgttc
atgccgtggaacggctacaactacgaggattcgatcctgatctccgagcgcatcgtcaag
gacgacgtgttcacctcgatccacatcgaggaattcgaggtcatggcccgcgacacgaag
ttggggccggaggacatcacccgcgacattcccaacgtcggcgaggaagccttgcgcaac
ctcgacgaggcggggatcgtctacattggcgccgaagtgcacccgggcgacatcctcgtc
ggcaagatcacccccaagggcgaatcgccgatgacgccggaagaaaagctgctccgcgcg
atcttcggcgagaaggccagcgacgtgcgcgacacttcgctcaagctgccgccgggggtt
tccgggacgatcgtcgaggtccgggtgttcaaccgccacggcatcgaaatcgacgaccgt
acccgcgcaatccagaacgaggaaatcgaacgcctcaagaaggatagcgaggacgagcgc
aacatcctcaatcgcgcgacctacaaccgcctgcgcgagatgctcgtcgggcaggtcgtc
gcggccgggccgaaggctgccaagaagggccaggtcatcgacgaggccgtcctcggcgaa
gtcgagcgccacgaatggtggaagttcgcggtcgccgacgatgcccgccaaacccagctc
gaggccgtccgcctccagtacgacgaggcgatcaaggtcatcaacgccaagttcgaggac
cgccgcgagaagcttgagcgcggcgacgagctggcgccgggcgtgctcaagatggtcaag
gtgttcgtggcggtgaagcgcaagctccagccgggcgacaagatggccgggcgccacggc
aacaagggtgtcatttcgcgcatcctccccgccgaggacatgccgttcctagaggacggg
accccggtggacgtcgtgctcaacccgctgggcgtgccttcgcgcatgaacgtcgggcag
atcttcgagacgcatctgggctgggccgcgcgcggtctcggccagcagatcaccgcggcg
ttgcaggaatggcgcgacgccaatccgaaccccgaggcggcggcgccgccctcggccctg
gtcgaccggctcaaggacatctacggcgagcggtaccacgaccagatcgacgcgcggacc
ccgtccgagatcgtcgacatggccgagctgctcaagaacggcgtgccgatgggcaccccg
gtcttcgacggcgcgcgcgaggcggatgtctcggcgatgctggtcaaggcaggcctcgat
ccgtcgggccaggtcacgctctacgacgggcgtaccggcgacgcgttcgaccgcaaggtg
accgtgggctacatctacatgctcaagctgcaccacctggtcgacgacaagatccacgcg
cgttcgatcgggccgtactcgctggtcacccagcagccgctgggcggcaaggcccagttc
ggcggccagcgcttcggcgaaatggaggtctgggcgctccaggcctacggcgcggcatac
acgctgcaggaaatgctcacggtcaagtcggacgacgtgatcgggcggaccaaggtctac
gaggcgatcgtcaagggcgacgacaccttcgaggccggcatccccgagagcttcaacgtg
ctcgtcaaggaaatgcgcagcctcggcctcaacgtcgaactctcctcgatcgatacgagc
gaggaagacgagtggccgcaggcggcggagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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