KEGG   Neofusicoccum parvum: UCRNP2_9865
Entry
UCRNP2_9865       CDS       T03126                                 
Name
(GenBank) putative small nuclear ribonucleo protein
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
npa  Neofusicoccum parvum
Pathway
npa03018  RNA degradation
npa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:npa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    UCRNP2_9865
  09123 Folding, sorting and degradation
   03018 RNA degradation
    UCRNP2_9865
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:npa03019]
    UCRNP2_9865
   03041 Spliceosome [BR:npa03041]
    UCRNP2_9865
Messenger RNA biogenesis [BR:npa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     UCRNP2_9865
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     UCRNP2_9865
Spliceosome [BR:npa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    UCRNP2_9865
SSDB
Motif
Pfam: LSM FoP_duplication
Other DBs
NCBI-ProteinID: EOD43432
UniProt: R1E7N3
Position
Unknown
AA seq 128 aa
MSERGHFRGGRGGGRGGDRGGRGGGRGGHGGNQERPKKENILDLGKLMDKEICVKFNGGR
EVTGTLKGYDQLMNLVLDDVKEVMRDDEGNETTRTLGLTVARGTLLVLISPLDGSEEIAN
PFAPTEDE
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtctgagcgcgggcacttccggggcggccgcggaggcggcagaggcggcgatcgtggc
ggacgcggcggcggacgcggagggcacggcggcaatcaggaacgcccgaagaaggaaaac
atcctcgatctggggaagctcatggacaaggagatctgtgtcaagttcaacggcggtcgc
gaggtgaccggcacgctgaagggctacgatcagctcatgaacctggtgttggacgatgtg
aaggaagtcatgcgcgatgacgaaggcaacgaaaccacccgcaccctcggtctgactgtc
gcacgcggcactctgctcgtcctgatttcgccacttgacggcagcgaagagatcgccaat
ccctttgccccgacggaggacgagtga

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