KEGG   Novosphingobium pentaromativorans: JI59_11130
Entry
JI59_11130        CDS       T03399                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
npn  Novosphingobium pentaromativorans
Brite
KEGG Orthology (KO) [BR:npn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:npn03016]
    JI59_11130
Enzymes [BR:npn01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     JI59_11130
Transfer RNA biogenesis [BR:npn03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    JI59_11130
SSDB
Motif
Pfam: DNA_pol_A_exo1 RNase_H_2
Other DBs
NCBI-ProteinID: AIT80286
UniProt: G6EBR8
Position
2320306..2320929
AA seq 207 aa
MAVYLHEEDLPEGVLAPGPVAVDTETMGLITPRDRLCVVQISDGKGDEHLVRFGPGSTFD
APNLKAVLADPARLKLYHFARFDLAAIEHYLGVMAAPVFCTKIASKLVRTYTDRHGLKDL
VRELLGKEVSKQQQSSDWGAPELSDAQKDYAASDVRYLHAMHEILVERLAREKRTEIAQA
CFDFLPARARLDLAGWPDHDIFSHQAA
NT seq 624 nt   +upstreamnt  +downstreamnt
atggctgtctatctccacgaagaagatctccccgaaggcgtcctcgccccgggccccgtc
gccgtcgataccgagacgatgggcctcataaccccgcgcgaccgcctctgcgtggtccag
atttccgatggcaagggcgacgagcatctcgtccgcttcggccccggaagcacattcgat
gcgcctaatctcaaggctgtccttgccgatccggcacgcctcaaactttaccatttcgcg
cgcttcgacctggccgcgatcgaacattacctgggcgtgatggctgcgccggtgttctgc
accaagatcgccagcaagctggtgcgcacttacacagatcgccacggcctgaaggacctc
gtgcgcgagcttctcggcaaggaagtatccaagcagcagcagtcgagcgactggggcgca
cccgagctgagcgacgcgcagaaggactatgcggcatcggacgtgcgctatctgcacgcc
atgcacgaaattctcgtcgagcgcctcgctcgcgagaagcggaccgagatcgcgcaggcc
tgtttcgatttcctgccggcacgcgcccggctcgacttggccggctggccggatcacgac
atcttcagccaccaggccgcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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