KEGG   Novosphingobium sp. PP1Y: PP1Y_AT17260
Entry
PP1Y_AT17260      CDS       T01515                                 
Name
(GenBank) dihydrolipoamide dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
npp  Novosphingobium sp. PP1Y
Pathway
npp00010  Glycolysis / Gluconeogenesis
npp00020  Citrate cycle (TCA cycle)
npp00260  Glycine, serine and threonine metabolism
npp00280  Valine, leucine and isoleucine degradation
npp00310  Lysine degradation
npp00380  Tryptophan metabolism
npp00620  Pyruvate metabolism
npp00630  Glyoxylate and dicarboxylate metabolism
npp00640  Propanoate metabolism
npp00785  Lipoic acid metabolism
npp01100  Metabolic pathways
npp01110  Biosynthesis of secondary metabolites
npp01120  Microbial metabolism in diverse environments
npp01200  Carbon metabolism
npp01210  2-Oxocarboxylic acid metabolism
npp01240  Biosynthesis of cofactors
Module
npp_M00009  Citrate cycle (TCA cycle, Krebs cycle)
npp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
npp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
npp_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:npp00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    PP1Y_AT17260
   00020 Citrate cycle (TCA cycle)
    PP1Y_AT17260
   00620 Pyruvate metabolism
    PP1Y_AT17260
   00630 Glyoxylate and dicarboxylate metabolism
    PP1Y_AT17260
   00640 Propanoate metabolism
    PP1Y_AT17260
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    PP1Y_AT17260
   00280 Valine, leucine and isoleucine degradation
    PP1Y_AT17260
   00310 Lysine degradation
    PP1Y_AT17260
   00380 Tryptophan metabolism
    PP1Y_AT17260
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    PP1Y_AT17260
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:npp04147]
    PP1Y_AT17260
Enzymes [BR:npp01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     PP1Y_AT17260
Exosome [BR:npp04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   PP1Y_AT17260
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 FAD_oxidored GIDA FAD_binding_2 NAD_binding_8 HI0933_like AlaDh_PNT_C Lys_Orn_oxgnase FAD_binding_3 Thi4 Amino_oxidase 3HCDH_N
Other DBs
NCBI-ProteinID: CCA92610
UniProt: F6IMF8
Position
complement(1819354..1820751)
AA seq 465 aa
MADYDYDVLVIGAGPGGYVAAIRAAQLGLKTACAEGRETLGGTCLNVGCIPSKAMLHASE
YFEQAASGAMTKLGVKVTPELDLEAMHGQRRDSVKGLTGGIEFLFKKNKIDWLKGYAQFK
DAHTVEVAGKSVTAKNIVIATGSSVTPLPGVEIDNDKGVVVDSTGALELASVPRKMVVIG
GGVIGLELGSVWRRLGAEVTVVEFLDQLLPGMDGEVRKEAGKLFKKQGMTLKLGTKVTGV
EVKGKKAKVTVEPAAGGDAEVIEADAVLVSIGRRPNTEGLGLDKIGLELNQRGQIETDHD
FATKVDGVWAIGDVIPGPMLAHKAEDEGIAVAENIAGLTGIVNHDVIPGVVYTFPEIAGV
GLTEEAAKERGAVKVGKFPMLANSRAKTNHEPDGFVKVIADAETDRVLGVWCIASVAGTM
IAQAAQAMEFGATSEDIAYTCHAHPTHSEAIKEAAMAVTGKPIHI
NT seq 1398 nt   +upstreamnt  +downstreamnt
atggctgattacgattacgacgtccttgtcatcggtgccggcccgggcggctacgtcgcc
gctatccgcgccgcgcagctcggcctcaagaccgcctgcgccgaagggcgcgaaacgctg
ggcggtacctgcctcaacgtcggctgcattccctccaaggcgatgctccatgcctcggaa
tacttcgagcaggccgccagcggcgcgatgaccaagctgggcgtcaaggttacgcccgaa
ctcgacctggaggccatgcacggccagcgccgcgattcggtgaagggcctgaccggcggc
atcgagttcctgttcaagaagaacaagatcgactggctcaagggctatgcgcagttcaag
gacgcgcacaccgtcgaagttgccggcaagtcggtaaccgccaagaacatcgtcatcgcc
accggctcctcggtcacccccctgcccggcgtcgagatcgacaatgacaagggcgtcgtc
gtcgattcgaccggcgcgctggaactggcttcggttcccaggaagatggtcgtcatcggc
ggcggcgtgatcggcctcgagctcggctcggtctggcgacgcctcggcgcggaagtgacc
gtcgtcgaattcctcgaccagctcctgcccggcatggacggcgaagtgcgcaaggaagcg
ggcaagctgttcaagaagcagggcatgacgctcaagctgggcaccaaggtgaccggcgtc
gaagtgaagggcaagaaggccaaggtcaccgtcgagccagccgcgggcggcgatgccgaa
gtgatcgaggccgacgcagtgctcgtctcaatcggccgtcgtcccaacaccgagggcctc
ggcctcgacaagatcggcctcgagctcaaccagcgcggccagatcgagaccgaccacgac
ttcgcgaccaaggtcgacggcgtctgggccatcggcgacgtgatccccggcccgatgctg
gcgcacaaggccgaggatgaaggcattgccgtggccgagaacatcgcaggcctcaccggc
atcgtgaaccacgacgtcatccccggcgtggtctatactttccccgagatcgccggcgtc
ggcctgaccgaggaagcggccaaggaacgcggtgcagtcaaggtcggcaagttcccgatg
ctcgccaactcgcgtgccaagaccaaccacgagcccgacggcttcgtgaaggtgatcgcc
gatgccgagaccgaccgcgtgctcggcgtgtggtgcatcgcctcggttgccggcacgatg
atcgcccaggccgcgcaggccatggaattcggcgcgaccagcgaagacatcgcctatacc
tgccacgcgcacccgacccattcggaagcgatcaaggaagcggcgatggccgtgaccggc
aagccaatccacatctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (23)   
   KEGG PATHWAY (16)   
   KEGG MODULE (7)   
Chemical substance (27)   
   KEGG COMPOUND (27)   
Chemical reaction (11)   
   KEGG ENZYME (1)   
   KEGG REACTION (10)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (15)   
   Pfam (15)   
All databases (84)   

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