KEGG   Nanorana parkeri (Xizang Plateau frog): 108788104
Entry
108788104         CDS       T04897                                 
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
npr  Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:npr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    108788104 (CLP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:npr03019]
    108788104 (CLP1)
Enzymes [BR:npr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     108788104 (CLP1)
Messenger RNA biogenesis [BR:npr03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     108788104 (CLP1)
SSDB
Motif
Pfam: CLP1_P CLP1_N Clp1 CbiA ATP_bind_1 AAA_16 MMR_HSR1 AAA_18 AAA_24 AAA_29
Other DBs
NCBI-GeneID: 108788104
NCBI-ProteinID: XP_018413339
Position
Unknown
AA seq 440 aa
MSDDVLGGSSEVSSSWPSSTPSVPSTKFELEKETELRLEVEGSAPVQVELVSGQAEVFGT
ELVKNKKYTFPPGSRAAVFTWHGCCVQLFGSADVGYVSKDTPMLLYLNTHVALEQMRVQA
EREGERGPRVLVAGPSDVGKSTLCRLLLNYGVRIGRRPALVELDVGQGSVSVPGTVGALC
VERPADVEEGFSTQAPLVYHFGSTTPGTNIKLYNKLTSRLAHVFNLRCESNRRAAVSGCI
INTCGWVKGGGYQAIIHAASAFEVDVVIVLDQERLYNDLHRDLPHFVHTVLLPKSGGASE
RSKECRREARDQRVREYFYGARGSLYPHAFEVKFSEVKVYKVGAPSIPDSCLPLGMSQED
NQLKLVPVTPGRDMAHHLLSVVPLEGGLPDESIEEKNAAGFIVISGVDIERQTLTVLSPA
PRPLPKCVLLIMDIRFMDLK
NT seq 1323 nt   +upstreamnt  +downstreamnt
atgtcggacgacgtcctcggcgggagctcggaggtcagcagttcctggccgtcctccacc
cccagcgttccatccaccaagtttgagctggagaaggagacggagctccggctggaggtg
gaaggctcggcccccgtgcaggtggagttggtctcgggccaggccgaggtgttcggcaca
gagctggtgaagaacaagaagtacacgttcccgccgggcagccgagccgccgtcttcacc
tggcacggttgctgcgtccagctgtttggaagtgcggacgtgggctacgtctctaaggac
acccccatgctgctctacctcaacacccacgtggccctggagcagatgcgggtgcaagcg
gagcgggaaggagagcgcgggccccgggtgctggtggccgggccgtccgatgtgggtaaa
tctacgctctgccgactgctcttgaactatggagtgaggatcggccggcgcccagccttg
gtggagctagatgtcgggcagggctcggtgtcggtcccggggacggtcggggctctgtgt
gtggaacggccagctgacgtagaggaagggttctcgactcaggcaccacttgtctatcac
ttcggctccactacaccggggaccaatatcaagctgtacaacaagttgacctcccgcctg
gctcacgtcttcaacctgcgatgcgaatccaatcgccgagcagcggtcagcggctgcatc
attaacacctgcggctgggtcaaaggcggcggctaccaagccatcattcacgccgcctct
gctttcgaggtggacgtcgtgatcgtgctggaccaagagcgcctgtacaacgacctccac
cgcgacctcccgcacttcgtccacaccgtccttctcccgaaatccggcggcgcctcggag
aggtccaaggagtgcagaagggaggccagagaccagcgggtgcgggagtacttctacggc
gctcggggttctctctaccctcacgccttcgaggtgaagttctccgaggtcaaagtctac
aaagtgggggctccgtctatccccgactcctgccttcccctgggcatgtcgcaggaggac
aatcagctgaagctggtgccggtgacacccggcagggacatggcccaccacctgctcagc
gtggtgcccctcgagggcgggctaccagatgaaagcatcgaggagaaaaacgcggcgggg
ttcatcgtcatcagcggcgtggacattgaaaggcaaacgctgacggtgctttccccagca
ccccgacctctgcccaagtgcgtcctgctcatcatggacataaggttcatggaccttaaa
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (31)   

Download RDF
DBGET integrated database retrieval system