KEGG   Nanorana parkeri (Xizang Plateau frog): 108796813
Entry
108796813         CDS       T04897                                 
Name
(RefSeq) collagen alpha-1(V) chain-like
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
npr  Nanorana parkeri (Xizang Plateau frog)
Pathway
npr04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:npr00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    108796813
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:npr00536]
    108796813
Glycosaminoglycan binding proteins [BR:npr00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   108796813
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1
Other DBs
NCBI-GeneID: 108796813
NCBI-ProteinID: XP_018423847
Position
Unknown
AA seq 1844 aa
MSMDTHTRWKRRSWRRDLSLLVALSFICSQCHAGEPADVLKVLDFPNLPDGVQKSTGFCA
FRKSTKGPDVAYRVSKSAQLSAPTKQLFPDTPFPQDFSILTTVKAKKGSQSFLMSIYNEH
GIQQVGMELGRSPVFLFEDHLGNPLPEDYPLFSNINLSDGKWHRIGISVHKKQVTLFVDC
KKRAQKHLERSEHSIVDTNGIVVFGTRILDEDFFEGDIQQLLIVPDHRAAFDYCEHYSPD
CDTAVPDTPQSQDPNQDEYQYPEAAEGDEGYYYEYPYYEEENDKAPTVKPTPATGEEAIR
PQPDFEEDTTVPTEAPAVTTEAARVKIEESEGNPGPTTYDYNYGVHEDYYSPQPYEDTNY
SEVDEKEERTNVDEESIDRTAEVITSTVTATNNGTLVSGVGSSRQDGNVDSDFAEETIDT
YDDSFTDQEEYGIGDLNESAVIVPEYEISGGARGEKGQKGEPAIIEPGMLVEGPPGPEGP
AGYSGPPGTTGPPGPSGDPGERGPTGRPGLPGADGLPGPPGTMLMLPFRFSGGGDGSSKG
PQVSAQESQAQAILQQARLALRGPSGPMGLTGRPGPMGSPGPSGLKGESGDLGPQGPRGS
QGPPGPSGKPGRRGRAGSDGARGMPGQTGTKGDRGFDGLAGLPGEKGHRGESGPSGPPGP
PGEDGERGDDGDVGPRGLPGEPGPRGLLGPKGPPGPPGPHGVAGMDGPVGIKGSVGPQGE
PGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKSGLPGMPGADGPAGHPGKEGPPGEKGT
LGPSGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGPKGDRGEIGASGP
RGEDGPEGPKGRGGPNGETGPLGLAGEKGKLGVPGLPGYPGRQGPKGSIGFPGFQGANGE
KGTRGTPGKPGPRGQRGPTGPRGERGPRGTTGKPGPKGNSGGDGPAGPPGERGPPGPQGP
TGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGH
PGPPGPPGEQGLPGLAGKEGSKGDPGPAGVPGKDGPPGLRGFTGERGLPGPLGSPGLKGS
EGPPGPPGPAGSPGERGAAGPAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGI
QGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGNKADKGEQGPPGPAGPQGPIGQPGPSGA
DGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGP
RGPSGSAGADGPQGPPGGVGNPGSSGEKGDPGESGEPGLPGELGPPGPKGERGEKGEAGL
QGTAGPAGPKGPPGDDGPKGSPGPVGFPGDPGPPGEHGPSGQDGPPGDKGDDGESGQPGS
PGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGESGLEGPSGKTGPVGPQGPPGKPGP
EGLRGIPGPVGEQGLPGSTGADGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGE
QGEKGDRGLPGPQGTHGPKGEQGIFGPSGPVGPPGPPGLPGGPGPKGAKGSSGPTGPKGE
MGIPGPPGPPGPPGEVIQPLPVQSSKRTKRNIDASQVVDEGNTDTNYMDYADGMEEIFGS
LNSLKLEIEQMKHPLGTQGNPARTCKDLQLCHPDFPDGEYWIDPNQGCSRDSFKVYCNFT
AGGESCIFPDKKSEGARLTSWPKENPGSWFSEFKRGKLLSYVDSDGNPIGVVQMTFLRLL
SAAARQNVTYNCYQSVAWHDASSDSYDKAIRFLGSNDEEMSYDNNPYIIAIMDGCASKKG
HQKTILELNTPKVEQAPIVDLMFNDFGDPTQKFGFEVGPVCFQG
NT seq 5535 nt   +upstreamnt  +downstreamnt
atgagcatggatacccatacgaggtggaaacggagaagttggaggagagacctgtccctt
cttgtagctctaagctttatatgttcccagtgtcatgcaggtgaaccagctgatgttttg
aaggttttagattttcctaatttacctgatggagtccaaaaatcaacaggattctgcgca
ttcagaaaatcgacaaagggacccgatgtggcatacagagtgtcgaagagtgcgcagctt
agtgcccccaccaagcagctcttcccagataccccattcccgcaagatttctctattttg
acaactgtgaaagccaaaaagggaagccagtcattccttatgtccatttacaatgaacac
ggcatccagcaggttggcatggagctgggcagatcacccgtctttctattcgaggatcac
ttgggaaatccactccccgaggattaccccctcttcagtaacattaatctctccgatgga
aagtggcatcggattgggatcagcgtccacaagaagcaagtcaccctctttgtggactgt
aagaagcgggcgcagaaacacctggagcgcagcgagcactctatcgtggacaccaatggc
atagtggtgttcggcaccaggatcctagacgaagacttctttgagggggacattcagcaa
ctcctcatcgtcccagaccatcgagctgccttcgattattgtgaacactacagtcccgac
tgtgacacggctgtccctgacaccccccagtctcaggacccaaatcaggatgagtatcaa
taccctgaggccgcagaaggagatgaagggtattactatgaatatccatactatgaagag
gaaaatgataaagccccaactgtaaagcccacaccagccaccggtgaggaggccatacga
ccgcagccagactttgaagaggataccacagtacccacagaagctccggctgtaactact
gaagcagcaagagtcaagattgaagaaagtgaaggcaacccaggcccaacaacatatgac
tataactatggtgtacatgaagattattactcaccacaaccctacgaagacaccaactac
tctgaggtggatgaaaaagaggagaggaccaatgtggatgaagaatccattgacaggact
gcggaggtcatcaccagcactgtgaccgcaaccaacaacggtacattggtgagtggtgta
ggaagctccagacaggatggaaatgtcgatagtgatttcgccgaggagaccatagacacc
tatgatgactcttttactgaccaggaggagtacggtataggggatttgaatgaatcagct
gtgattgtgccagaatatgagatttctggaggtgctcggggtgagaagggacagaaaggg
gagcctgccatcattgaacctggaatgctggttgaaggcccacccggcccagagggtcca
gccggatattctggtcctcctggaaccacaggtccccccggcccgtctggtgatcctggt
gagaggggaccaactggccgaccaggacttcctggagctgacggtttaccaggacctccc
ggtaccatgctcatgctgcctttccgcttctcaggaggaggagatggatcttccaaagga
ccccaagtatctgcacaggaatcccaggctcaggcaattctacaacaagccaggctggca
ctgagaggaccttctggtccaatgggcctcacaggaagaccaggaccaatgggatctcca
ggtccttctggattaaagggggagtcaggtgacctaggaccacagggtcctcgtggttct
caaggtcccccaggtccttcagggaagccaggacgacggggtcgggcgggcagtgatggt
gctcgtgggatgccaggacaaactggaaccaagggtgacagaggatttgacggtctggct
ggtttacctggagagaaggggcatcgtggtgaatcaggcccatctggacctccaggacca
ccaggagaagatggagagcggggtgatgatggagatgttggacccagaggattgccaggt
gaacctggaccacgagggctactcggaccaaaaggacctccaggcccccctggacctcac
ggtgtggcaggaatggatggaccagtcggcatcaagggcagtgtgggacctcaaggtgaa
ccaggaccaccaggccagcagggaaacccaggtgcacagggtcttccgggtccacaggga
gccatcgggccaccaggagagaagggtccactaggaaaatctggacttcctggcatgcct
ggagctgacggccccgctggtcaccctgggaaggaaggacccccaggagagaaaggaact
ctgggtccttcaggacctcagggaccaattgggtatccaggacctcgtggcgtgaagggt
gctgatggaatccgaggcttgaaaggaacaaagggagagaagggtgaagatggatttcct
ggatttaagggtgacatgggacctaaaggagacagaggtgaaattggtgcatctggtcct
agaggtgaagacggtcctgagggtccaaaggggcgcggcggtcctaatggagaaactggc
ccacttggactggcgggtgaaaagggaaaacttggtgttccaggattgcccggataccca
ggaagacaaggtccaaagggttctatcggctttccaggattccaaggagcaaatggcgag
aaaggcacaagaggaacccctggcaaaccaggtccaagggggcaacgaggtccaacgggt
ccacgtggtgaaagaggtccaaggggtacaacaggaaagccaggccccaagggtaactcc
ggaggggatggcccagctggtcctcctggtgaaaggggaccacccggacctcaaggaccc
actggatttccaggaccaaagggcccccctggtccaccagggaaagatggacttcctggc
caccccggacagagaggtgaaactggctttcaaggaaaaactggccctccaggtccccct
ggcgttgtcggcccacagggtcctactggagagactggtcccatgggcgaaagaggtcat
cccggccctcctggaccacctggtgagcaaggtttacctggtctggcaggaaaggaagga
tctaagggagatcccggcccagctggtgtgcctggtaaagatggaccacctggtttaaga
ggattcactggagaacgtggtcttcctggcccacttggttctcctggactgaaaggcagt
gaaggacccccaggacctcctggccctgctggatctcctggagaaagaggagctgcagga
cctgctggccccattgggttgccaggaagacccggcccacaaggaccacctggaccagct
ggtgaaaaaggggctccaggagaaaagggtcctcaggggccggccggacgtgatggtatc
caaggtcctgttggtctcccaggcccagctggaccagttggtcctccaggagaagatgga
gataagggtgaaattggagagcctggacagaagggaaacaaggctgacaaaggagagcag
ggaccacctggacctgcaggacctcagggacctattggtcagcctggtccatcaggagca
gatggagagcctgggccccgaggacagcaaggcttgtttggtcagaaaggtgacgaaggc
cccagaggtttccctggaccaccaggccctgtcgggctacagggtttacccggacctcca
ggtgagaagggagagacaggtgatgttggtcagatgggaccaccaggtccacctggtcca
agagggcccagtggttcagcaggagctgatggcccacaaggtcctccaggaggagttgga
aatcctgggtcttctggagagaagggtgaccctggagagtctggtgaacctggtcttccg
ggagagcttggaccaccaggcccaaaaggcgaaagaggggaaaaaggagaagcaggtctt
caaggaacagctggtccagctggtccaaaaggacctcctggggatgatggtcctaaaggt
agccctggtcctgttggatttcctggagaccctggcccccctggtgaacatggtccttct
ggtcaagatggacctcctggtgacaaaggagatgatggtgaatctggacagccaggatca
ccaggaccgactggagagccaggtccatctggcccacctggaaaaaggggtccacctggt
ccagcaggtccagaaggacggcaaggagagaaaggtgcaaagggtgaatcaggcttagaa
ggtccttctggcaagactggtcctgttggtcctcaaggccctcctggaaaacctggacct
gaaggtctaagaggtattccaggacctgtgggtgagcaaggtctgccaggatcaactggt
gctgacggcccacctggtcctatgggaccaccaggtttgcccggtttgaagggtgattca
ggtccaaaaggtgaaaagggtcatcctggtttaattggcctcattggacctccgggagaa
cagggtgaaaagggagaccgtggtctaccaggtcctcagggtactcatggaccgaaagga
gaacagggtatttttggcccatctgggcctgtgggtcctcccggtcctccaggattgccg
ggtggtcctgggccaaaaggtgctaaagggtcatcaggtccaaccggtccaaagggtgag
atgggtattcctggccctccaggtcctccaggtcccccaggagaagttatacagccactt
cctgttcagtcatcgaagagaaccaagcgaaatattgatgccagtcaagtggtggatgaa
ggaaatacagatacaaactacatggactatgctgacggtatggaggaaatctttggctct
ctaaattccctgaaactggaaattgaacagatgaaacacccattgggcactcagggtaat
cctgccaggacatgcaaagacttacagctatgtcaccccgacttccctgatggtgaatat
tggattgatcctaaccagggctgctcccgagactcctttaaagtttactgcaattttacg
gcaggtggagaatcgtgcatctttccagacaagaagtctgaaggagctagacttacctcc
tggcccaaagagaaccccggttcctggttcagtgaattcaagcgtggtaaactgttgtcc
tatgtggattcggatggaaatcccattggcgttgtacagatgacattcctgcggttactc
agtgccgctgccaggcagaacgttacctacaactgctaccagtccgtggcttggcacgat
gcctcctctgacagctacgacaaggccatccgcttcttgggatcaaacgatgaagagatg
tcttatgacaacaacccttacattatagccatcatggacggctgtgcatcaaagaagggc
caccagaaaaccatcctggaacttaacacccccaaagtggagcaagcacctatagtggac
cttatgttcaatgactttggagacccaacgcaaaaatttggctttgaagtgggaccagta
tgtttccaaggctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (64)   
   KEGG ORTHOLOGY (1)   
   RefGene (60)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (75)   

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