KEGG   Neisseria mucosa FDAARGOS_260: A6J88_04130
Entry
A6J88_04130       CDS       T04958                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
nsi  Neisseria mucosa FDAARGOS_260
Pathway
nsi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:nsi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    A6J88_04130 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nsi03021]
    A6J88_04130 (rpoC)
   03400 DNA repair and recombination proteins [BR:nsi03400]
    A6J88_04130 (rpoC)
Enzymes [BR:nsi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     A6J88_04130 (rpoC)
Transcription machinery [BR:nsi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     A6J88_04130 (rpoC)
DNA repair and recombination proteins [BR:nsi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      A6J88_04130 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 Apocytochr_F_C Peptidase_M23 RPOC_hybrid
Other DBs
NCBI-ProteinID: ARC50548
Position
808559..812734
AA seq 1391 aa
MNLLNLFNPLQTAGMEEEFDAIKIGIASPETIRSWSYGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDYECLCGKYKRLKFKGVTCEKCGVEVTLSKVRRERMGHIELAAPVAHIWFLK
SLPSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTPLQRRQLLTEDDYYNKLDEYGDDFDA
KMGAEGIRELLRTLDVAGEIEILRQELESTGSDTKIKKIAKRLKVLEAFHRSGMKLEWMI
MDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELHAPDIIVRNEKRM
LQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVG
PYLRLHQCGLPKKMALELFKPFIFHKLEKQGLASTVKAAKKLVEQEVPEVWDILEEVIRE
HPIMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQM
EARTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTRDRINAKGEGSLFADVKEVHRAYH
TKQVELGTKITVRLREWVKNEAGEFEPVVTRYETTVGRALLSEILPKGLPFEYINKALKK
KEISKLINASFRLCGLRDTVIFADHLMYTGFGFAAKGGISIAVDDMEIPKEKAALLAEAN
AEVKEIEDQYRQGLVTNGERYNKVVDIWGRAGDKIAKAMMDNLSKQKVIDRDGNEVDQES
FNSIYMMADSGARGSAAQIKQLSGMRGLMAKPDGSIIETPITSNFREGLTVLQYFIATHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSDGFVMKAVVQGGDVIEALRDR
ILGRVTASDVVDPSSGETLVEAGTLLTEKLVDMIDQSGVDEVKVRTPITCKTRHGLCAHC
YGRDLARGKLVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVEAKSNGTA
RFSSQMRYVANNKGELVVIGRSCEVVIHDDIGRERERHKVPYGAILMVQDGEAIKAGQTL
ATWDPHTRPMITEHAGWVKFENVEEGVTVAKQTDDVTGLSTLVVIDGKRRSGSASKLLRP
TVKLLDENGLEICIPGTSTPVSMAFPVGAVITVREGQEVGKGDVLARIPQASSKTRDITG
GLPRVAELFEARVPKDAGMLAEITGTVSFGKETKGKQRLIITDVDGVAYETLISKEKQIL
VHDGQVVNRGETIVDGAVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKISDKHIEVII
RQMLRRVNIVDSGETEFITGEQVERGDVMTANEKALEEGKEPARYENVLLGITKASLSTD
SFISAASFQETTRVLTEAAIMGKQDELRGLKENVIVGRLIPAGTGLTYHRSRRQQWQEAE
QEASEIEATDE
NT seq 4176 nt   +upstreamnt  +downstreamnt
atgaatttgttgaacttatttaatccgttgcaaactgccggcatggaagaagagtttgat
gccatcaaaatcggcattgcttctcccgaaaccattcgttcatggtcttacggcgaagtt
aaaaagcctgaaaccatcaactatcgtacgttcaaacctgagcgtgacggtctgttctgc
gccaaaatctttggtccggtcaaagactacgagtgcttgtgcggaaaatataaacgcttg
aaatttaaaggtgtaacctgtgaaaaatgtggcgtggaagtgactttgtccaaagtgcgc
cgcgaacgcatgggtcatatcgaattggccgcgcctgtggcacacatttggttcttgaaa
tccctgccttctcgtttgggtatggtgctggacatgactttgcgcgacattgaacgcgta
ttgtactttgaagcatttgttgtgaccgaccccggcatgactccgctgcaacgccgtcaa
ttgctgactgaagatgactactacaacaaactggacgaatacggcgacgatttcgatgcc
aaaatgggtgcggaaggtatccgcgaattgttgcgcaccttggatgtagcaggcgaaatc
gaaatcctgcgccaagagcttgagtcgaccggttcagataccaaaatcaaaaaaatcgcc
aaacgcttgaaagtgttggaagccttccaccgttccggtatgaaactggagtggatgatt
atggacgtgctgccggtattgccgcctgatttgcgtcctttggttccgttggatggcggt
cgttttgccacttccgatttgaacgatttataccgtcgcgtcatcaaccgtaacaaccgt
ctgaaacgcctgctggaactgcacgctcctgacatcattgttcgcaacgaaaaacgtatg
ttgcaagaagcggttgactcgctgttggataacggccgtcgcggtaaagccatgaccggc
gccaacaaacgtccgctgaaatcgttggcagacatgattaaaggtaagggcggtcgtttc
cgtcaaaacctgctgggtaaacgtgtggactactctggtcgttccgtgattaccgtaggt
ccatacctgcgtctgcaccaatgtggtttgccgaaaaaaatggctttggaactgttcaaa
ccgttcattttccataaactggaaaaacaaggtctggcttctaccgttaaagcagcgaaa
aaattggtagagcaagaagtaccggaagtatgggacattttggaagaagtcatccgcgaa
catccgattatgctgaaccgtgcgccgaccctgcaccgtttgggtattcaagcgtttgaa
cctatcctgattgaaggtaaagccattcagttgcatccgttggtatgtgccgcgtttaac
gccgactttgacggtgaccaaatggcggtacacgttccattgagcttggaagcgcaaatg
gaagcgcgcaccttgatgctggcttcaaacaacgtattgtctcctgcaaacggtgaaccg
attatcgtaccttcccaagacatcgtattgggcctgtactacatgactcgcgaccgcatc
aatgctaaaggtgagggtagcctgtttgctgatgtgaaagaagtgcatcgtgcataccat
accaaacaggttgagctgggtacgaaaatcaccgtacgtctgcgtgaatgggtgaaaaac
gaagccggtgaattcgagccagtcgttacccgttacgaaacgactgtcggtcgtgcattg
ttgagcgaaatcctgcctaaaggcttgcctttcgagtacatcaacaaagcgctgaagaaa
aaagaaatttccaaactgattaacgcatcgttccgcctgtgcggcttgcgcgatacggtt
attttcgccgaccacttgatgtatactggtttcggattcgcagccaaaggcggtatttcc
attgctgttgacgacatggaaattccgaaagaaaaagcagccttgttggctgaagccaat
gccgaggttaaagaaatcgaagaccaataccgtcaaggtttggtcaccaacggtgaacgc
tacaacaaagtggtggatatttggggtcgtgccggcgataaaatcgctaaagcgatgatg
gacaacttgtccaagcaaaaagttatcgaccgtgatggcaacgaagtcgatcaagagtca
tttaactccatctatatgatggcagactccggtgcccgtggttctgcggctcagattaaa
cagttgtctggtatgcgtggcttgatggcaaaaccagacggctcgattattgaaacgccg
attacctcaaacttccgcgaaggtctgactgtattgcaatactttattgcgacccacggt
gcgcgtaagggtttggcggataccgcattgaaaaccgcgaactccggttacctgacccgt
cgtctggtagacgtaactcaagacttggtcgttgttgaagacgattgtggtacttcagac
ggctttgttatgaaagcggtcgtacagggcggtgatgtgattgaagcattgcgcgatcgt
attttgggtcgtgttaccgcgtctgacgttgtcgatccgtcaagtggcgagaccttggtt
gaagccggtacgttgttgacggaaaaactggtggatatgattgatcaatccggtgtggat
gaggtcaaagtccgtaccccgattacttgtaaaacccgccatggcttgtgtgcgcactgt
tacggtcgcgacttggcacgcggcaaactggttaatgccggtgaagcagttggcgtgatt
gccgctcagtctatcggtgaaccgggtacccagttgaccatgcgtacgttccacatcggt
ggtgcggcatcccgtgcggcagcagccagccaagttgaagccaaatccaacggtacggca
cgattcagcagccaaatgcgttatgttgccaacaataaaggcgaattggttgtcatcggt
cgctcttgcgaagtagttatccatgatgacatcggccgtgaacgcgaacgccacaaagtg
ccttacggtgcgatcttgatggttcaagatggtgaagccattaaagccggtcaaacgttg
gcaacttgggatccgcatacccgtccgatgattaccgaacacgcaggttgggtgaaattc
gaaaatgttgaagagggtgtaaccgttgccaaacaaactgacgatgtaaccggtttgtct
accttggtggttatcgacggcaagcgccgttccggcagcgcatccaaactgcttcgtcct
actgtaaaattgttggatgaaaacggtctggaaatctgtattccaggtacctccaccccg
gtatctatggcattccctgtgggtgcagtgattaccgtgcgcgagggtcaggaagtcggt
aaaggcgacgtattggcgcgtatcccgcaagcctcttccaaaacccgcgatattaccggt
ggtctgccgcgcgttgccgagctgtttgaagcacgcgtgccgaaagatgcaggtatgctg
gcagaaattaccggtaccgtttcattcggtaaagagaccaaaggcaaacagcgtctgatt
atcactgatgtagacggcgtagcatacgagactttgatttccaaagagaaacaaattctg
gtgcacgacggtcaagtggtaaaccgcggtgaaaccatcgtagacggagcggtagatccg
catgatattctgcgtctgcaaggtatcgaagcactggcgcgttatatcgttcaagaggtg
caagaggtttaccgtcttcaaggcgtgaagatttccgataaacacatcgaagtcatcatc
cgtcagatgctgcgccgtgtgaatattgtcgattcaggtgaaaccgaattcattaccggt
gagcaagtcgaacgcggcgatgtcatgaccgccaatgaaaaagctttggaagaaggcaaa
gaaccggcacgttacgaaaatgtattgttgggtattaccaaagcctccttgtcaaccgac
agctttatttctgccgcatcgttccaagaaacgacccgcgttctgaccgaagccgccatt
atgggcaagcaagacgagttgcgcggtctgaaagagaacgtaatcgtaggtcgtctgatt
cctgccggtaccggtttgacctaccaccgcagccgccgccagcaatggcaggaagcagag
caagaagcttccgaaatcgaagcaacagatgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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