KEGG   Niabella soli: NIASO_00930
Entry
NIASO_00930       CDS       T03682                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
nso  Niabella soli
Pathway
nso03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nso00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NIASO_00930
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nso03019]
    NIASO_00930
   03009 Ribosome biogenesis [BR:nso03009]
    NIASO_00930
Messenger RNA biogenesis [BR:nso03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     NIASO_00930
Ribosome biogenesis [BR:nso03009]
 Prokaryotic type
  rRNA helicases
   NIASO_00930
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 UTP25 SNF2-rel_dom YwpF AAA_22 HPS6
Other DBs
NCBI-ProteinID: AHF14145
UniProt: W0ETK7
Position
220616..222265
AA seq 549 aa
MVTFESLGIEEGLLQSLQKIGFKTPTPIQEQAIPVLLQGTKDFIGLAQTGTGKTAAFGLP
LLQLINKAFVSPQALIICPTRELCLQIANDLQSFKPENGNVHVTAVYGGTAISQQIREIR
RGTHIVVATPGRLIDLIERKAINLNDIHYVVLDEADEMLNMGFKDDIEFILKETPNRQST
WLFSATMPKEIRQVSKRYMENPFEITVGKANSVNVNIAHQYYQTQHINRYETLKRIIDFN
PGLYGIIFTRTKADAQHITEQLIREGYDIEALHGDLTQAQRDKVMARFREKSLELLIATD
VAARGIDVQGITHVINYELPDDTEVYTHRSGRTGRAGLSGISISIVTPKELYRLRQIEKL
VNTKFNKIDIPSGKDVCRKQFFHFIDKMLNADISHGEYEAYVPVLKEKFEAVTKEEVLQR
VAALEFDRFLRYYENSADLNLRNDKGDRKGDRDASRDNRNRSRGNGQYQRLFVNLGTKDG
FYKASFLQFILDMSRLNKEQLGRIDMKEMNSWVEVEADAARIMIKALDGKNYRGRRIRMN
DAEAGGRRR
NT seq 1650 nt   +upstreamnt  +downstreamnt
gtggttacatttgagtcacttgggattgaagagggattacttcaatcattacagaagata
ggttttaaaacacctactcccattcaggaacaggcaattcccgttttactgcaaggaaca
aaggattttataggactggcacagacaggtacaggaaaaacggccgccttcggtttgcct
ttactgcaattaattaataaggcatttgtatcgccgcaggcactgatcatttgccctacg
cgcgaactttgtttacaaattgcaaatgacctgcaatcctttaaaccggagaatggaaac
gttcacgttacggcggtttatggcggaacggccatcagccagcaaatacgcgaaataaga
aggggaacacatattgttgtggctaccccgggccgtttaattgacctgatcgagcgcaaa
gcgatcaaccttaatgatatccactatgtggtactggatgaggcggatgaaatgctgaat
atgggttttaaggatgatatcgaatttattttaaaagaaacgcccaaccgccaaagcacc
tggctgttcagtgctaccatgcccaaagagatacggcaggtaagtaaacggtatatggaa
aacccgtttgaaattaccgtgggtaaggcaaattctgttaacgttaatattgcccaccaa
tactaccaaacgcagcatataaaccgttatgaaaccctgaaaaggatcatcgattttaac
cccggcttatatggtattatttttacccgcaccaaggcggatgcacagcatattaccgaa
caactgattcgtgaaggatacgatatagaagcgctgcatggtgatctgacgcaggcgcag
cgcgataaagtgatggcacgttttcgtgaaaaatcactggagctgctgatcgctacagac
gtggctgcccggggtatcgacgtacagggcatcacccatgtgatcaactatgaattgccc
gatgatacagaagtgtacacccaccggagcggaagaaccgggcgggcgggattgagcggc
atttccatttcaattgtaacgcccaaggaattatatcgcctgcggcagattgaaaagctg
gtaaacacaaagtttaataagatcgacattccttccggaaaggatgtttgccgcaagcag
tttttccattttatcgataaaatgctgaatgccgatatcagtcacggcgaatatgaagcc
tatgtaccggtactaaaagaaaaatttgaggccgtaacaaaagaggaagtattgcagcgg
gtggccgcgcttgaatttgaccggttcctgaggtattatgagaactctgcagatctgaac
ttaagaaatgataagggtgaccggaaaggagacagggatgcatccagggataaccggaac
cgctcccgtggcaacggacaataccagcggctgtttgtaaacctgggtaccaaggacggt
ttttacaaagccagcttcctgcaatttatcctggatatgagccggttaaataaagaacaa
ctgggacgtattgatatgaaggaaatgaacagttgggtggaagtggaggctgatgcagcg
cggattatgatcaaggcgctggacggcaaaaattaccgcggcagaagaatcagaatgaat
gatgctgaagcgggtggaaggagaagataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (28)   

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