KEGG   Nodularia spumigena: BMF81_01032
Entry
BMF81_01032       CDS       T05403                                 
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
nsp  Nodularia spumigena
Brite
KEGG Orthology (KO) [BR:nsp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:nsp03016]
    BMF81_01032 (rtcB)
Enzymes [BR:nsp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     BMF81_01032 (rtcB)
Transfer RNA biogenesis [BR:nsp03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    BMF81_01032 (rtcB)
 Prokaryotic type
   tRNA splicing ligases
    BMF81_01032 (rtcB)
SSDB
Motif
Pfam: RtcB DUF4514 Pellino_RING
Other DBs
NCBI-ProteinID: AVZ29970
UniProt: A0A2S0Q6R1
Position
complement(1249534..1250715)
AA seq 393 aa
MPYEKLEITTPSPVLSWANHPLASDETKMAKNVASLPFVFKHVALMPDVHLGKGALVGSV
IATKEAIIPAAVGVDIGCGMSAIKMPFTGEQLEGKLKKIRLDIEAAIPTGFNANKDVEKS
AANWQRWRDFSDLHPGVQDLESKAMKQMGSLGGGNHFIEVCLDTKNQVWLMLHSGSRNIG
NQLAQCHISTAKELAKMAVNKLPDPDLSYFIAGTPEFQAYWHDLQWAQDYARFNRDVMMA
RFKHIVEKYLAGGKATKPLLQVNCHHNYAEKEVHFNEDVYVTRKGAVRAQTEDYGIIPGS
MGAKSFIVKGKGNAHSFCSCSHGAGRLMSRAKAKKAYTLDDLIDQTQGVECRKDTGVLDE
IPGAYKSIDQVMANQADLVEVVATLKQVVCVKG
NT seq 1182 nt   +upstreamnt  +downstreamnt
atgccttacgaaaaattagaaattactacaccatcccctgttttatcttgggcaaatcat
cctttagcgtctgatgaaaccaagatggcaaaaaatgtggcatccctaccatttgtattt
aaacacgtagctttgatgccagatgttcacttaggaaaaggtgctttagttggttctgtt
atcgctaccaaagaagcaataattccggcggctgtgggcgtggatattggttgcgggatg
agcgctatcaaaatgccatttacaggtgaacaactcgaaggcaaactgaagaaaattcgc
ttagatattgaagcagcaattcctacgggatttaatgctaataaagatgtggaaaaatct
gccgctaattggcaacggtggcgggatttttccgacttacatccaggtgttcaagacctg
gaaagtaaagcgatgaaacaaatgggttctctagggggaggaaatcactttattgaagtt
tgcctcgatacaaaaaaccaagtttggctaatgttgcattctggttcacgtaacattgga
aatcagctagcacaatgccatattagtacagccaaagagttagcgaagatggcggttaat
aaactacctgaccctgatttgtcttacttcattgctggtacgccagaatttcaagcctac
tggcatgatttacagtgggcgcaagattacgcacgttttaaccgtgatgtcatgatggcg
cgttttaagcacattgttgagaaatatttggcgggaggaaaggcgactaaacctttatta
caggtcaattgtcaccacaattatgctgaaaaagaggtgcattttaatgaggatgtttat
gtaactcgtaagggtgcagttcgcgcccaaactgaagactatggcattatccccggttca
atgggagcaaaatcttttattgtgaagggtaaaggtaatgctcatagcttttgttcctgc
tcccacggggcaggacggttaatgtctagagctaaggcaaaaaaggcttatactcttgat
gatttgattgatcaaactcagggtgtagaatgccgcaaggatacgggtgttttggatgaa
attcctggtgcttataagtctattgatcaggtgatggctaatcaagctgatttggtggag
gttgttgctactctgaagcaggttgtttgtgtgaagggttaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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