KEGG T06172: Nstercoris

Nitrosomonas stercoris: Nstercoris_01601

Entry

Nstercoris_01601  CDS       T06172

Name

(GenBank) RNA-splicing ligase RtcB

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

nst Nitrosomonas stercoris

Brite

KEGG Orthology (KO) [BR:nst00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:nst03016]
    Nstercoris_01601
Enzymes [BR:nst01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     Nstercoris_01601
Transfer RNA biogenesis [BR:nst03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    Nstercoris_01601
Prokaryotic type
   tRNA splicing ligases
    Nstercoris_01601

SSDB

Motif

Pfam:

RtcB

Other DBs

NCBI-ProteinID:

BBL35338

UniProt:

A0A4Y1YNE6

Position

1:complement(1619466..1620893)

AA seq 475 aa
MDISQLQALQPYLWTLPKTAHEERAEVLLYGSQPLLKSMDEKVLEQITNVATLPGIVGAA
MAMPDAHWGYGFPIGGVAAFDAEQNGVISAGGVGFDISCGIRCLRSNLNLADAAPLLQQL
ADRLFETIPAGVGVEGTLQFTPQQLDQVLAYGAHWAVKQGYGDTADLEFIEENGCVAGAQ
PYNVSTLAKQRQQGEMGTLGSGNHYLEVQVVEHIYDQATAQAFGLHQGQLLVSIHCGSRG
LGHQIGTEYLMMFVKAANQLGIHLPERELACAPIQSPAGQQYIGAMQAATNCALANRQIL
THLARETFGEIYPHAVLETLFDVSHNTCKKETHEFHGQTRTLYVHRKGATRAFGPGHPQL
PARYQTTGQPIIIGGSMGTGSYILAGMENNPAFASCSHGAGRAISRNQALKKWQGKELIK
ELKQQGILIRTRSMRGAAEEAPGAYKDVDIVATDTEKAGLARRVAFLKPKVCIKG

NT seq 1428 nt +upstreamnt +downstreamnt
atggatatcagccaattacaagcacttcaaccttatctttggaccttacccaaaacagca
cacgaagaacgagctgaggtactactgtacggcagccagccattactaaaaagtatggat
gaaaaagtactggaacagattaccaacgttgccacgctgcccggtattgttggcgctgcc
atggcaatgccagatgctcattggggttacggttttcctattggtggtgtggcagccttt
gatgcagaacaaaatggtgtgatttctgctggcggcgtagggtttgatatctcttgcggc
attcgttgtctgcggagcaatctcaatttagccgatgcagcaccactgctacagcaacta
gctgatcgattgtttgaaacgatcccggcgggagtgggtgtagaaggcacactccaattc
actccgcaacaactcgatcaagtactagcatatggcgcccattgggcggttaagcaaggt
tatggtgacacagctgatctagaatttattgaagaaaatggctgtgtagccggtgcgcaa
ccgtataatgtttcaacgcttgccaagcaacggcaacaaggcgaaatgggtacattaggt
tcaggcaatcactatctggaagtacaagtagtagagcatatttacgaccaagcaacagcc
caagcttttggcttgcatcaaggtcaattgctcgtttccattcactgtggttcgcgtggc
ttagggcatcaaatcggaaccgaatatctgatgatgtttgttaaagcagctaatcaattg
ggcatacatttacccgaacgcgaacttgcatgtgctccaattcaatcaccagcaggacag
cagtatattggagcaatgcaagcagcaactaactgcgcgttggcaaatcggcaaatcctg
acacatctagcccgtgaaacatttggcgaaatctatccacatgccgtgttagaaacacta
tttgatgtatcacacaatacctgcaaaaaagaaacacacgaattccatggccaaactcgg
acgctttatgtgcaccgcaaaggcgcaacgcgtgcctttggacctgggcatcctcaatta
ccggcacgttatcaaacaactggccaacctattatcatcggcggcagcatgggaacaggt
tcttatatcctggctggaatggaaaataacccggcatttgcttcctgtagccatggcgct
gggcgagccatcagccgcaatcaagcactcaaaaaatggcaaggcaaagaattaattaag
gagctaaagcaacaaggtattcttattcgcacccgctccatgcgtggtgctgcagaagaa
gcaccaggagcctacaaagatgtagatattgttgctacagatacagaaaaagcaggatta
gctcgtcgtgttgctttcctaaagcctaaggtatgtattaaaggttga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (9)   

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