KEGG   Nicotiana sylvestris (wood tobacco): 104221972
Entry
104221972         CDS       T05026                                 
Name
(RefSeq) superkiller viralicidic activity 2-like 2
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
nsy  Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nsy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104221972
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nsy03019]
    104221972
   03041 Spliceosome [BR:nsy03041]
    104221972
   03009 Ribosome biogenesis [BR:nsy03009]
    104221972
   03016 Transfer RNA biogenesis [BR:nsy03016]
    104221972
Enzymes [BR:nsy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     104221972
Messenger RNA biogenesis [BR:nsy03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     104221972
Spliceosome [BR:nsy03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    104221972
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    104221972
Ribosome biogenesis [BR:nsy03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    104221972
Transfer RNA biogenesis [BR:nsy03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    104221972
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk ResIII Helicase_C ATPase_2
Other DBs
NCBI-GeneID: 104221972
NCBI-ProteinID: XP_009771435
UniProt: A0A1U7W2K9
Position
Unknown
AA seq 993 aa
MGSFKRKSQEFSNNEGNIILPPSKQMKQSGLVDEAVACVHDVSYPEGYIPSAASTLPQQD
SKPAKEFPFTLDPFQSEAINCLNNGESVMVSAHTSAGKTVVALYAIAMCLKNNQRVVYTS
PIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYNGSDVIREVAWV
IFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYT
DYRPTPLQHYIFPSGGDGLYLVVDEKGKFREDSFQKALNALVPANEGDKKRENGKWQKGL
VVGKSGEDSDIFKMVKMIIQRQYDPVICFSFSKRECEFLAMQMAKMDLNNDDEKVNIETI
FWSAMDILSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCLFATE
TFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDEKL
EPPTVKSMLKGSADALNSAFHLSYNMLLNQIRCKDADPKDLLRDSFYQFQADRAIPDLEK
QAKILEEERDSIVIEEEDSLERYYSLLEQYKSLKKDVRNIVLSPKYCLPFLQPGRLVCIE
CTKIDDDVPTFSIKEEVTWGVIINFERVKGLSEDDANKKPEDANYTIDVLTRCIVQKDEV
GRKTIKIVPLKNAGEPAVVSLPLSQIDSLSSVRLVIPKDLLPSEVRENTLKKVSEVLKRF
SREGMPLLHPEDDMKVQSSTYRKASSKIEALESLFEEHKIATSPLIKEKLKVLHKKKELT
GKIRSIKRAMRTSKALAFKDELKARKRVLRRLGYIKSDDVLESKGNVVCLISSADELTLS
ELMYNGTFEKIKVEELVSLLSCFVWQEKLQDTQKPREELELLFAQLQDTARRVAKVQLES
KVQIDVENFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIE
AAKAVGDEKHEAKFKEAVAKIKRDIVFAASLYL
NT seq 2982 nt   +upstreamnt  +downstreamnt
atgggttcttttaagaggaagtcgcaagaattctcaaataatgagggtaatattatactt
cctccaagtaaacagatgaaacaaagtggtttagtggatgaagcagttgcatgtgtgcat
gatgtatcatacccagaaggctatattccctctgctgcttcaactttgcctcaacaagac
tcaaaacctgctaaagagttcccttttacccttgacccttttcaatccgaagctatcaat
tgccttaataatggcgaatccgtcatggtatcagcacacacgtcagctggaaagacagtt
gttgcattgtatgcgattgccatgtgtctgaagaataaccagcgagtagtatatacttca
ccaattaaggctcttagtaatcagaagtatagagaattcaaagaggagttttcagatgtg
ggtttgatgaccggagatgtcacgattgatccaaatgcttcttgcttggtaatgactaca
gagatctggcgtagtatgcagtacaacggatcagatgttataagggaggtggcttgggtt
atttttgatgaggtacattacatgcgtgacagagaaagaggtgtggtttgggaggaaagt
attgttatggccccgaaaaattctcgttttgtgttcctctcggccacggtgcccaatgct
aaagagtttgcggattgggttgcaaaggtccatcagcaaccatgtcacattgtttatacg
gactacagacccacaccacttcagcattatatatttccttctggtggtgatggattatac
ttggtggttgatgaaaaagggaagtttcgtgaggatagttttcagaaagctttaaatgct
ctagttccagccaatgaaggggataagaaaagagagaacggcaagtggcagaagggtctg
gttgttggcaaatctggtgaagatagtgacatattcaagatggttaaaatgattattcag
cggcaatatgatcctgtaatatgtttcagcttcagcaaaagagagtgtgaatttctagca
atgcagatggctaaaatggatcttaacaatgatgatgagaaggtgaatattgaaactatt
ttttggagtgctatggacattttatcggatgatgataaaaagctaccgcaggtttcaaat
atgcttccccttttgaaacgtggaattggtgtgcatcattctggtttgcttcctatattg
aaagaagtgattgaaatcctgttccaagaaggattcatcaagtgtttgtttgccacagag
accttcagtataggtctgaacatgcctgcaaaaactgttgtcttcacaaatgttcgtaaa
tttgatggagacaagtttaggtggatatccagtggtgagtatattcagatgagtggtcgt
gctggtcgtcgggggattgatgaacgtgggatctgcatccttatggttgatgagaagctt
gaacctcctacagtgaaatccatgctaaaaggaagtgctgatgcattaaacagtgccttc
catttaagctataacatgcttttaaatcaaatacggtgtaaagatgctgatcctaaagat
cttctccgtgactcgttctatcaatttcaagcagatcgtgcaattcctgatcttgagaaa
caagcaaaaattcttgaagaggagagagactcaattgtgattgaagaagaagatagcctt
gagagatactatagtcttctagaacaatataagagcttaaagaaggatgtacgtaacatt
gttttatctccaaaatattgcttgccattcttgcagcctggtaggcttgtatgcattgag
tgtacgaagattgatgatgatgttccaaccttctccatcaaagaagaggtcacatgggga
gtaataattaattttgaaagggtgaaaggtctttctgaagatgatgcaaacaaaaaaccg
gaggatgcaaactatacgatagatgtacttacgagatgtatagtgcagaaggatgaggtt
ggtagaaagacaattaaaattgtcccgttgaagaatgccggggaaccagctgttgtttct
cttcctttgtcccagattgatagtttgagcagtgtccgtcttgtgataccaaaggatctt
ttgccttcggaagttcgagaaaatacactaaagaaggtttctgaagttctcaaaagattt
tcaagagagggcatgcctctcttacacccggaagatgacatgaaggttcaaagtagcacg
tacaggaaggcttcaagtaagatagaagccttggagagtctgtttgaagagcacaagata
gcaacgtctcccctcataaaagaaaagcttaaggttttgcataagaagaaagaacttact
ggcaaaatcagatcaattaagagagcaatgcgtacttcaaaagccttagcgttcaaagat
gaacttaaagcaaggaaaagagttctcaggagactcggatacatcaaaagtgatgatgtc
ctggagtctaaagggaacgttgtctgtttaatcagcagcgcagatgagttgaccttgagt
gaattgatgtataatgggaccttcgagaaaattaaagtggaggagcttgtctctcttctc
tcttgttttgtgtggcaagaaaagcttcaggatactcagaagcccagagaagagctagag
ttgctctttgcgcagttacaagatacagctcgaagggttgcaaaagttcagctcgagagc
aaggtccaaatagacgttgagaactttgtgagttcattccggcctgatatcatggaggct
gtctatgcgtgggctaaaggatctaagttttatgaaataatggagattactcaggtgttt
gagggcagtttaatcagggctatcaggagactggaggaagttcttcagcagctaatagaa
gctgcaaaagccgttggggatgaaaagcatgaggcaaaatttaaagaggctgtagccaag
atcaagagggacattgtctttgcggcatctctgtatttgtag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (7)   
   Pfam (7)   
All databases (24)   

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