KEGG   Nicotiana sylvestris (wood tobacco): 104236562
Entry
104236562         CDS       T05026                                 
Name
(RefSeq) DNA polymerase beta isoform X1
  KO
K03512  DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
Organism
nsy  Nicotiana sylvestris (wood tobacco)
Pathway
nsy03410  Base excision repair
nsy03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:nsy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    104236562
   03450 Non-homologous end-joining
    104236562
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nsy03400]
    104236562
Enzymes [BR:nsy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     104236562
DNA repair and recombination proteins [BR:nsy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     104236562
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    X-family DNA polymerases
     104236562
SSDB
Motif
Pfam: DNA_pol_B_palm DNA_pol_lambd_f DNA_pol_B_thumb HHH_8 BRCT HHH_5 PTCB-BRCT Cdd1 NTP_transf_2 BRCT_2 DUF6305
Other DBs
NCBI-GeneID: 104236562
NCBI-ProteinID: XP_009788805
UniProt: A0A1U7XQP8
Position
Unknown
AA seq 539 aa
MAPKSTSKKDKSPPSDPDGMFSGMVVFLIETGVQSRRLQIWKQKLVQMGAKIEERFSKNV
THVFAIDANSLLQKVDRERLTRSKAKLLAYQWLEDSLTKGEKEFEDLYVLSLQSGGGGSL
SPKADNGSHPNSSEITPKKGRSSAEDAKNASPRHMIDAKDLAVVDSRDTKSASSLASRSS
SPEVASPEVIDSHNKPVGTSDSSSLYKPPDLNRNITQIFGKLINIYRALGDDRRSFSYYK
AIPVIEKLPFKIESANQVKHLPAIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVKTISLFG
EVWGIGPATALKLYEKGHRTLDDLRNEDSLTHSQRLGLKYFDDIQSRIPRHEVEEMERLL
QKIGEEILPSVIVVCGGSYRRGKSSCGDMDVVITHADGKSHIGFLPKFVKRLKDMKFLRE
DLVFSVHSTEGTDSGVDTYFGICTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRR
LRLLAESKGFHLDDTGLFPATHGAGGKRTKGSASLKFDTEKQVFDFLGFPWLEPNERNL
NT seq 1620 nt   +upstreamnt  +downstreamnt
atggcgccaaaatctacgtcgaagaaggataaatctccaccgtcagatccagatggaatg
ttttcgggtatggttgtgttcttgatcgaaaccggagtccaatccaggcggttacagata
tggaagcagaaattggtgcaaatgggggctaaaatagaggaacgtttttccaaaaatgtt
actcatgtttttgcaattgatgcgaattcgcttcttcagaaagttgatcgagaacgtctt
acccgctctaaagctaaacttctcgcatatcagtggctagaggacagcttgacaaaagga
gagaaagaatttgaggatctgtatgtcttgtccctgcaatcaggaggaggaggctccctt
agtcctaaagctgataatggaagtcatcctaatagcagtgaaattacaccaaagaaaggt
cgaagttctgctgaagatgccaagaatgcaagcccaagacacatgattgacgctaaagac
cttgctgtagttgattcacgagatactaaaagtgcctcttcactcgcatcacgttcttca
agcccagaagtggcaagtcctgaggtcattgattctcataataagcctgttggaacatca
gactcatcttcactttataagcctccggatttaaaccgaaatatcactcagatatttggg
aagctcatcaacatatatagagcactgggtgatgaccggagatcattcagctattataaa
gctataccagttattgagaaattgccattcaaaattgagagtgcaaaccaggttaagcac
ctacctgctattggaaagtcgatgcaagaccatattcaggagatagtcaccacagggaag
ctgtctaaattggaacattttgagaaggatgaaaaggtaaaaacaattagcttatttgga
gaggtttggggtattggtccagccactgctctaaaactttatgagaaaggacaccgaact
cttgatgaccttagaaatgaggattcgctgactcattctcaaaggttggggttgaaatat
tttgatgacattcaatccaggattccacggcatgaggttgaagagatggagcgtctacta
cagaaaattggagaggaaattttgcccagtgtgattgttgtgtgtggaggatcatataga
cgtggaaagtcttcttgtggtgatatggacgttgttattactcatgctgatggtaagagt
catataggctttcttcctaagtttgtaaaacgtctaaaagacatgaagtttttgagagaa
gatctggtcttcagtgttcatagcacagagggtacagattcaggagtcgacacatatttt
gggatttgcacctatcctggccgagaattgcgacatcgcattgactttaaggtgtatcca
agggatatatatgcatttggactgatagcatggactggtaatgacgtcttgaataggagg
cttagattattagcagagtccaagggcttccatttagatgatacagggctatttccagct
actcatggagccggtgggaaacggactaaaggtagtgcaagcttgaagtttgatacagag
aagcaagtctttgatttccttggatttccttggctcgaaccgaatgaaaggaacttgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (11)   
   Pfam (11)   
All databases (31)   

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