KEGG   Nicotiana sylvestris (wood tobacco): 104243891
Entry
104243891         CDS       T05026                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
nsy  Nicotiana sylvestris (wood tobacco)
Pathway
nsy03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:nsy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    104243891
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nsy03021]
    104243891
Enzymes [BR:nsy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     104243891
Transcription machinery [BR:nsy03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     104243891
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 104243891
NCBI-ProteinID: XP_009797463
UniProt: A0A1U7XZS3
Position
Unknown
AA seq 1447 aa
MEHDLIEQQVPSGTLKGIIFNILSETDAAKLAAKVIGVVNEVTDPALGFPNPIFECSTCG
AKDGKKCEGHFGLINFPFTILNPYFISEVAKILNKVCPGCKSVRRDKVKGADTTSACNYC
DGILRGYPPMKFKVSPKDMFGRTAIIAEVSEKKLQQTSGGSLASDYWNFIPDDAQQDASL
NSSKYKKVLTHAQVYSILKDVDPGFLEGLLRRKNSIFLKSCLLTPNSHRVTEFGQHMIFD
ESNRLYRKLIDFRGTANDLSMCVFNRIKVSKIRAERSLTNDPNAPATGLKYVKELVLAKR
TNHAFRMVVVGDPNIKLGEIGIPCHVAEDLHMAEPLSSRNWEKLSDHCDLMILQKGAIHV
RRNGVLVRISVMDQLQRGDIIYRPLIDGDVVLINRPPSIHQHSLIALSVRILPIISVLSI
NPLVCSPFRGDFDGDCLHGYVPQSIDSRVELSELVGLNRQLIDGQSGQNLLSLSHDSLTA
AHLILEEGVFLDRFQMQQLQMFCPHQVGMPAIVRAPSRNRSYWTGKQLFGLFLPSDLDCD
FPSNGVCISDGEIVTSSGGSSWLRDASENLFYSLVKHHGGDTLDLLYAAQAVLCEWLSMR
GLSVSLSDLYISSDPYSRENMIDEVFCGLQEAERLSYVQLLMTRYNHDFLAGSLEVSQKA
MGFDLEFMSIMLQKSASLSQASVTAFKQVFRDIQNLVYNYASKENSFLAMLKAGSKGNLL
KLVQHSMCLGLQQSLVPLSFRMPRQLSCDAWNNHKAHLPFEKAHNVPERPGSYIPCAVVE
NSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYIGYDGTVRNAYGNQ
IVQFSYYNTDQIASTYNRASHAIGGHPVGSLAACAISEAAYSALDLPIGALEPSPLLNLK
KILEAGVKSNSSEKTASLFLSKRLGRWAHGFEYGALEVKGHLERLLLSDIVSTVMICFSP
GTYKSTHSSPWVCHFHIDKEYVKTRRLKLKSVIDALNMRYRSTRMEAGIDLPSLHITCKD
CSVAEMQKANSKICIAVAVVETSKDSFSLLDTLRDLVIPFLLETVIKGFSAFKKVDILWR
ELPSTSKSSRGSTGELYLQVFMSESCDRNNFWNALVDSCLHIMDLIDWEWSHPDNVHDLT
VAYGVDVAWKYFLRNLNSAVSETGKKILPEHLVLAADCLTATGEFVPLNTKGLAQQRKCA
GVISPFMQACFSHPGDSFVRAAKTELSDDLQGSLEALAWGKTPSTGTGFSFDIIYSGKGY
EPAAPTDVYALLGNHVTSNKQQVKVTLDEDNETADKALARRLCKLDDLNTKRCKSQWSIA
NLRSFLSFNDIKKLSQALKQMLSKYAIDRELSEADKSIVMMALHFHPRRSEKIGKGAMEI
KIGYHKEYEDSRCFMLVRTDGTVEDFSYRKCLQHALELIAPQKAKTYKWLNGASCGPTAS
ALQNEVK
NT seq 4344 nt   +upstreamnt  +downstreamnt
atggagcatgatcttattgagcagcaagtgccttcaggtactctgaagggcataattttc
aatatcttatcggagactgatgcagccaaattggcagctaaggttattggagtagtgaat
gaagtaacagatcctgcattggggtttccgaatccaatctttgagtgctccacctgtggt
gcaaaagatgggaaaaaatgtgaaggtcattttggactaataaacttcccgttcacaata
ctcaatccttatttcatatcagaggttgcaaagatcctgaacaaagtatgtccgggatgt
aaatctgtgcggcgtgataaggtcaagggtgctgatacgacatctgcctgcaattactgt
gatggaattttaagaggttatccaccaatgaaatttaaagtatctcctaaagacatgttt
ggaaggactgccattattgcagaagtgagcgaaaagaagcttcagcaaacttctggagga
agtttggcttctgactattggaattttatcccagatgatgcacaacaagatgcaagttta
aattcttcaaagtacaaaaaagttttaacacatgctcaggtatatagcattctgaaagat
gttgatccagggtttcttgaaggacttctcagaaggaagaactcaatcttccttaaaagc
tgcctcttgactcccaatagtcatcgtgtcaccgaatttgggcagcacatgatatttgat
gagagtaataggctttacagaaagctgattgacttcagagggacagcaaatgacttgagc
atgtgtgtttttaatagaattaaagtttccaagatacgtgcagagaggtcactaaccaac
gatcctaatgcccctgctactggtttgaagtatgtgaaagaactggttctggcaaaacgc
actaaccatgctttccgcatggttgtggttggtgatcccaacataaagctaggtgagatt
ggtattccgtgtcatgttgcagaggatctccatatggcggaacccctaagttcacggaat
tgggaaaagttgtctgatcactgtgatcttatgattcttcagaagggagcgattcacgtt
cgtagaaatggtgtcttagttcgtattagtgtaatggatcagttgcagagaggggatata
atatatagacctctaattgatggagatgttgtgttgataaatcgacctccatctattcat
caacactcactaattgctctgtctgttaggattcttccaataatttctgttctttcaatc
aatcctcttgtgtgttctccattccgtggggattttgatggtgattgccttcatggttat
gttccgcaatcaatcgattctagggttgagcttagtgagcttgttggtctgaatcggcag
ctgattgatggacagagtggtcaaaatcttctttcgttaagtcatgacagcttaactgct
gctcatttaattttggaagaaggagttttcttggaccgctttcagatgcagcagctacaa
atgttttgtcctcatcaagtggggatgcctgctattgtacgagcaccatcaagaaacagg
agttattggactgggaaacagttattcggcttgtttttgccatcagaccttgactgtgat
tttccatcaaatggcgtctgtattagtgatggggagattgtgacatcttctggtgggtcg
tcttggctgcgtgatgccagtgaaaatctcttttatagtcttgttaaacaccatggaggt
gacactcttgacctcctttatgctgcacaagcagttctttgtgagtggttgtcaatgagg
ggtcttagtgtttcattgtccgatctttacatctcttctgatccatattcccgagaaaat
atgattgatgaagtcttttgtggtttgcaagaggcagagcgactatcttatgtccaactg
ctgatgacgaggtataatcacgatttccttgctggaagcctagaagtaagccagaaagcc
atgggttttgatttggagtttatgtctatcatgctgcagaagtcagcttctctgagtcaa
gcttctgttactgctttcaagcaagttttccgggatatccagaatttagtatataattat
gcaagcaaggagaattcgtttctggctatgttaaaagctgggagtaagggcaacctgcta
aaactggtccaacacagcatgtgtcttggtttgcagcagtctttggttccgttatcattt
agaatgccgcgtcaactttcttgtgatgcatggaataatcataaagcacatcttcctttt
gagaaagctcataatgttcctgaacgtcctggttcttacatcccgtgtgctgtggttgag
aattcatttcttgcgggtttgaatcctctagagtgttttgtgcattcattgacaacccgt
gatagttcttttagtggacatgctgatgtttctggaacattgaaccgtaagcttatgttt
ttcatgcgtgatctgtacattggatatgatggaacagtgagaaatgcttatgggaatcaa
attgtgcagttctcttactacaacacagaccaaattgcttctacatataaccgtgcttct
catgcaattggtggccatcctgttggttcattggcagcctgtgccatttctgaagctgca
tacagtgctttggatctacctatcggtgcacttgagccatcacctttactcaacctaaag
aaaatactggaagctggagtaaagagtaatagtagcgagaaaactgcatctctgtttctt
tcgaaaagacttggcagatgggctcatggttttgaatatggagctttagaggtcaagggt
catctagaaaggcttcttctttcagatattgtttcgaccgtaatgatatgcttctcccct
ggaacatataaaagcactcacagtagtccctgggtttgtcattttcatatagataaggaa
tatgtgaagacaagaaggctgaagctgaaatcagtaatagatgctcttaacatgagatat
cgatcaactagaatggaagctggaatagatcttccaagcctgcatataacatgcaaggat
tgttccgtcgctgaaatgcaaaaagcgaattccaaaatttgcattgcagttgctgtggtt
gagacctcaaaagattctttttcactactggatacacttcgtgatttggtgattccattc
cttcttgagactgtgatcaaaggtttctccgcatttaaaaaagttgatatcttatggaga
gagttgccaagtacatcaaaatcttccagaggctctaccggggaactatatttgcaggtc
tttatgtcagaaagttgtgatcggaacaacttttggaatgcacttgtggatagttgcctc
catataatggatttgattgattgggagtggagtcatcccgataacgtccatgatctgact
gtagcctatggagttgatgtagcatggaagtactttctacgtaatctgaattctgccgtc
tctgaaactggcaagaaaatccttccggaacacttggtacttgcagcagattgtctcaca
gctacaggggaatttgttccgttgaatacaaaaggtctggcgcagcaaagaaagtgtgct
ggtgttatttcaccatttatgcaagcctgcttttcgcatcccggggactcttttgttagg
gctgccaagacagaattaagtgatgatcttcaaggaagtctggaagcattggcgtgggga
aaaaccccttccacagggactgggttttcattcgacattatctattctggaaagggatat
gagcctgctgcaccaacagatgtgtatgctctgctgggcaaccatgtcacatcaaataag
caacaggtgaaggtcactcttgacgaagacaatgaaacggctgacaaggctcttgcacga
cgtctttgtaaacttgatgatctcaatacaaagagatgtaaaagccagtggtcaattgca
aatttgagaagtttcctttcattcaacgacataaagaagctctctcaggcattgaagcaa
atgctgtccaaatatgctattgatcgcgagttaagtgaagcagacaagtccatagtaatg
atggcattgcattttcatcccagaaggagtgagaagatcggaaaaggagcaatggaaata
aagattggttaccacaaagaatatgaagattcccgctgctttatgttggtacgtacagat
ggaacagttgaagacttctcgtatcgtaagtgtctacaacatgctctggaactgatcgct
cctcaaaaggcaaaaacctataaatggttgaatggagcatcatgtggtcccactgcctca
gccttgcaaaatgaggtcaagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (6)   
   Pfam (6)   
All databases (29)   

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