KEGG   Nicotiana tabacum (common tobacco): 107770853
Entry
107770853         CDS       T04643                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:3.6.4.13]
Organism
nta  Nicotiana tabacum (common tobacco)
Pathway
nta03013  Nucleocytoplasmic transport
nta03015  mRNA surveillance pathway
nta03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nta00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107770853
  09122 Translation
   03013 Nucleocytoplasmic transport
    107770853
   03015 mRNA surveillance pathway
    107770853
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nta03019]
    107770853
   03041 Spliceosome [BR:nta03041]
    107770853
Enzymes [BR:nta01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     107770853
Messenger RNA biogenesis [BR:nta03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     107770853
Spliceosome [BR:nta03041]
 Complex C
  Other components
   EJC/TREX
    107770853
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    107770853
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-GeneID: 107770853
NCBI-ProteinID: XP_016445673
UniProt: A0A1S3Y0E6
Position
Un
AA seq 428 aa
MGENKENDAYEEELLDYEEDDEKLPDSVTGKVNGDSAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALI
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRVLA
LARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMTQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq 1287 nt   +upstreamnt  +downstreamnt
atgggagagaacaaggagaacgatgcatatgaagaggagctgctcgactatgaagaagat
gatgaaaaactccctgattccgtcaccggaaaagtcaacggcgattccgccaaaaagggt
tatgttggtattcacagttcgggtttcagagattttcttctaaagccagagctattgcgg
gctattgtggactctgggtttgagcatccttccgaagtgcaacatgagtgtattccacaa
gctattctgggaatggatgttatttgccaagctaaatctggaatggggaaaaccgctgtt
tttgttctttcaactctgcaacagattgaacctgttgctggtcaggttgctgccctgatt
ctctgtcacactagggaattagcttatcagatctgtcatgagtttgagaggttcagcaca
tatctgcccgatatcaaggttgctgttttctacggtggtgtcaacatcaaactccacaag
gagctgctgaagaatgagtgtccgcatattgtcgttggaactcctggaagagtacttgca
ttggcaagagacaaggacctgtctttgaggaatgtgaggcattttatactagatgagtgt
gacaagatgcttgaatcacttgacatgaggagagacgtgcaggaaatcttcaaaatgact
cctcatgacaagcaagtcatgatgttttctgcaactctcagcaaggagattcgcccggtt
tgcaagaaattcatgcaagatccaatggaaatttatgttgacgatgaggccaagttgacc
ctgcatggacttgtacagcactacatcaaattgagtgaaactgagaaaaacaggaagctg
aatgacctgttggatgctttggacttcaaccaagttgttatttttgtcaagagtgtgagc
agagctgcagagttgaataagttacttgtggagtgtaattttccatctatctgcatccac
tctggcatgactcaggaagaaagactgacacgctacaagggtttcaaggaagggcacaag
agaattcttgtggcgactgatttggttgggagaggcatagacattgaaagggtgaacatt
gtcattaactatgacatgccagattctgcagatacttaccttcacagagtgggaagagct
ggtagatttggaaccaaaggccttgccataacatttgtgtcctctgcatcagattctgat
gttctcaatcaggttcaggagaggtttgaagtggatattaaagaacttcctgagcagatt
gacacttctacatacatgccatcttag

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