KEGG   Nicotiana tabacum (common tobacco): 107778374
Entry
107778374         CDS       T04643                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52B-like
  KO
K11594  ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
Organism
nta  Nicotiana tabacum (common tobacco)
Brite
KEGG Orthology (KO) [BR:nta00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nta03019]
    107778374
   03041 Spliceosome [BR:nta03041]
    107778374
   03036 Chromosome and associated proteins [BR:nta03036]
    107778374
Messenger RNA biogenesis [BR:nta03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     107778374
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     107778374
Spliceosome [BR:nta03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    107778374
Chromosome and associated proteins [BR:nta03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    107778374
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 107778374
NCBI-ProteinID: XP_016454108
UniProt: A0A1S3YPS2
Position
Un
AA seq 553 aa
MSMPWNGSYTEPTCSSRSTRPTYLPPHLRNPSLPPRSNVEQLNINAYDDVPVEVSGADIP
EPLSSFSEIGDLYDNIRRCKYVKPTPIQRYAIPVGMAGRDIMACAQTGSGKTAAFCFPII
SWILKDKRTTTSISTRGRGGCAFPLALILSPTRELSCQIHEEVKKFSYLTGLKVVVVYGG
APITPQLRNLEKGVDILVATPGRLVDMIEKSRVSLQAVKYLALDEADRMLDMGFEPQVRK
IVQKMKMPPPGRRQTMLFSATFPTEIQRLASDFLSNYIFLAAGKVGSSTDLIVQKVEFVP
DTDKKDHLLNLLHAQHSNQIVAKLALTLIFVETKRGADTLERWLVRSGIPSIAIHGDKMQ
FERERALKSFKSGQTPVLVATDVAARGLDVPNVAHVINFDLPRNIDDYVHRIGRTGRAGK
SGLATAFFNDKNVPLAKDLVELMQGANQEIPNWLSEYAETCYSSDGARTSRYVGSKFGGY
DYRSASFHSGNGNYSSQFVDTEDATNYAVSASAFTYGAPYAAGCYGPSEMDSFPAASYTY
SFDNAPVAASGWD
NT seq 1662 nt   +upstreamnt  +downstreamnt
atgagtatgccatggaatggttcttataccgagccaacttgctccagtcgttctactcga
cccacttacctccctcctcacctgcggaacccatcccttcctccacgttcaaatgttgaa
caactgaacataaatgcatatgatgatgttccagtggaggttagtggggctgatattccg
gagccactgtcgtctttttcggaaattggtgacttgtatgataacataagaaggtgcaag
tatgtgaagccaacgccgattcagcgatacgcaataccagtcggaatggcggggagagac
attatggcttgtgctcagactggttcagggaaaacggctgcgttttgctttcccattatc
agttggattttgaaggacaaaaggactactactagtattagtactaggggaaggggaggt
tgcgcttttcctcttgctctcatactctctcctactagagagttgtcttgtcagatacat
gaagaggtgaagaagttctcttacttgacaggattgaaggttgtggttgtatatggagga
gcacccataacacctcagttacgcaatctggaaaagggtgtagacattttagttgccaca
cctgggcgcttggtggacatgatagagaaatccagagtttccttacaagcagtgaaatat
ttggccttagatgaagctgatcggatgcttgatatgggctttgagccccaagttcgcaag
attgttcagaaaatgaagatgcccccacctggtagaaggcagacaatgctttttagtgca
acatttccaactgagatacagaggcttgcatcggattttctttcaaactacatcttcttg
gctgctggaaaagttgggtccagcactgatctaatagttcaaaaagttgagtttgttcct
gatacggacaagaaggatcatttactaaatcttcttcatgctcaacattcaaatcaaata
gttgcgaagctggctttgactctaatatttgtagagaccaaaagaggagcagatacgtta
gaacgttggttggtcaggagtggtatcccgtctattgccattcatggtgataaaatgcag
tttgagagagaacgagcactaaaatcatttaaaagtggacaaactccagttttagttgca
actgatgtagctgctcgcggtctggatgttccaaatgttgctcatgtcataaattttgac
ttgccaaggaacatagatgactatgtacacagaattggacgaacaggtcgtgctggtaaa
tctggactggcaactgcatttttcaatgacaagaatgtacctttggcaaaggatcttgtt
gaattgatgcagggggcaaatcaagaaattcctaattggctgagtgaatatgctgaaaca
tgttacagcagtgatggtgctagaacaagtcgctatgttggaagtaagttcgggggctat
gattacaggagtgcttccttccatagtggtaatggaaactactctagccagtttgttgat
acagaagatgctactaattatgctgtgtccgctagtgctttcacctacggtgctccttat
gctgcgggttgttatggtccttctgaaatggactcctttcctgctgcttcatacacttac
agttttgataatgcgcctgttgctgctagtggatgggattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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