KEGG   Nicotiana tabacum (common tobacco): 107808013
Entry
107808013         CDS       T04643                                 
Name
(RefSeq) RNA polymerase sigma factor sigC-like
  KO
K03093  RNA polymerase sigma-I factor
Organism
nta  Nicotiana tabacum (common tobacco)
Brite
KEGG Orthology (KO) [BR:nta00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nta03021]
    107808013
Transcription machinery [BR:nta03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     107808013
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r3 HTH_31 HTH_23 Peptidase_S30
Other DBs
NCBI-GeneID: 107808013
NCBI-ProteinID: XP_016487978
UniProt: A0A1S4BGH9
Position
Un
AA seq 572 aa
MHIKFQVFLLHSQNLLAMGFRLYLKWGFSVQPPFSSNSSSWPSSHSLKGKEALYDPARSL
KPFINEDCEPSHSDPFRVRTCLSDPQLWTSDTSVTTEIKTRIGRGSPTNIYGDIGSPKNG
ITLDGEKPTYLNTTRALHFSLLMKNLDLLENMFADSEVSRLERDIMVQLDKLGALEFFHT
CLSRTNHCSTFPEVLDVPRELIEEIEKDGLVGNGIDKVVVRSKKKQERKSRRNRASRNAN
DIITVQPHTKNIQEDLQQPKFFSGKRTHTSRNKRQKIAKNEAEMSRGVKLVAELERIRSI
LEEETGRVASFSSWAEAAGVEQKELQQRLHFGWYCRDELLKSTRSLVLYLARNYRGLGVA
FEDLIQAGNMGVLQGAVRFDDTRGYKFSTYVQYWIRKSLSKLVAQHARGIRIPFTICKAI
NQIHKARKALSRSHGKFPGDDEIAKYTGLSTARIAMASKCLRVVGSIDQKVGDCISAKVM
ELTPDKSIISPEETVIREDIIDNMYALLESLDPKEQQVVYFRFGLENHQRKSLEEIGRLY
GVSKEWIRRIERRALSKLRSADCFQDLTHYSV
NT seq 1719 nt   +upstreamnt  +downstreamnt
atgcatatcaaattccaagtctttctcttgcattcacaaaaccttttggctatgggtttt
aggctgtacctcaaatggggtttctctgtccaaccccctttctcctccaactcatcatca
tggccttcttcacattctttgaaaggaaaggaggctttatacgatccagctcggtctctc
aaaccttttatcaatgaggactgtgaaccttcacatagtgatcctttcagagtgcggact
tgtttatctgacccccaactgtggactagtgatacatcagtaactacagaaataaagacg
cgaatcggcagaggatcccctaccaatatatatggagatattggcagtcctaagaatggg
ataacacttgatggggagaaaccaacatatttaaacacaaccagagctcttcattttagt
ttactgatgaaaaatcttgatctgctggaaaacatgtttgctgattcagaggtgtcaaga
ttagaaagagatattatggtgcagctagacaagcttggagctttagaattctttcatact
tgtctctcaaggacaaatcattgttctacttttcctgaagtgcttgacgtgccaagggag
cttattgaagaaattgaaaaagatggccttgttggaaatggtatagataaggtagtcgta
cgttctaaaaaaaagcaagagcggaagtcaagaagaaacagagcatccagaaatgctaat
gacattattacagtgcagccacataccaaaaacatccaggaggatttgcagcagccaaag
tttttttctggaaaaagaacacatacctctagaaataaaagacagaaaattgctaagaat
gaggcagaaatgtcaagaggtgttaagctggtagcagaattggaaagaatcaggtcaatc
cttgaagaagaaactggtcgagtagctagtttcagtagctgggcagaagctgctggagtt
gaacagaaggagttgcagcagcgcttgcattttggttggtattgcagggatgagcttctg
aaaagtacacgatccttagtcttatatctggcaagaaactacagggggcttggagtggca
tttgaagacttaattcaggctgggaacatgggtgtgctacaaggtgctgtaagatttgac
gacactaggggatacaaattctcaacttacgttcagtattggataagaaaatcattgtca
aaattggtggcccagcatgctagaggaatccgaattcccttcactatatgcaaagcaata
aatcaaatacataaagctcgtaaagctctcagtaggagccacggaaaatttccaggtgat
gatgaaattgccaagtacacgggtctatccacggctaggattgcaatggctagtaaatgc
ctgagagttgtgggttcaattgatcagaaagttggagattgcatcagtgcaaaagttatg
gaactcacaccagataaatcaattataagcccggaggaaactgtcattagggaagacata
atagacaacatgtatgctcttttggaaagcttggatccaaaagagcagcaagtagtatat
tttaggtttggtcttgaaaatcatcagcgcaaatccctcgaggagattggtaggctttat
ggagtaagtaaagagtggattaggagaatagaacgaagagctctctcaaaattaagaagc
gctgattgtttccaagatttaactcattactctgtatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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