KEGG   Caenibius tardaugens: EGO55_19385
Entry
EGO55_19385       CDS       T05741                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
ntd  Caenibius tardaugens
Pathway
ntd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ntd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EGO55_19385 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ntd03019]
    EGO55_19385 (rnr)
   03016 Transfer RNA biogenesis [BR:ntd03016]
    EGO55_19385 (rnr)
Enzymes [BR:ntd01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     EGO55_19385 (rnr)
Messenger RNA biogenesis [BR:ntd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     EGO55_19385 (rnr)
Transfer RNA biogenesis [BR:ntd03016]
 Prokaryotic type
  tRNA degradation factors
   EGO55_19385 (rnr)
SSDB
Motif
Pfam: RNB CSD2 S1 RNase_II_C_S1 HTH_12
Other DBs
NCBI-ProteinID: AZI38425
Position
4100475..4102706
AA seq 743 aa
MPSKQQVLDFIQNSEVPAGKREIAKAFGLKGQEKIALKKLLRDMADEGLIDGKRTAFHLM
GGVPKVTVLRIVEIDDGEALAIPDSWAPDDAAPPPRLRIVERRGKGPALRVGERVLARTE
ETGSGWLAHPMKKLPNQGEALLGVVEIDGNGKTWLAPVDRRVRHASAIADLAGAEKGNLV
LAEPAGRGPRAGVRVIQVLGDPLAPRAFSLIAIHKHGIPHIFSGDVLEEGKLATQLPLSA
ENREDLRHLPIVAIDPADARDHDDAIWAEPDGDGGFRAVVAIADVSFYVRPGGKLDREAR
KRGNSVYFPDRVVPMLPEVLSADVCSLKEGEDRAAMVCHLSVSKEGQIKSWHFTRALVRI
SENIAYEDAQARIDSGEAEDNLKNLWACWRALESARHKRDPLELELPERRVVLDEQGKIA
SIAIRERLDAHRVVEDFMIAANVAAAKALESKASPVVYRIHEPPSREKLVALKDYLATFE
RKLALGQVITPGLFNRMLKDIADENEKALIMEAVLRSQTQAYYGPRNAGHFGLALGSYAH
FTSPIRRYADLLVHRALVDAFGLEQPAPKGNLPATSSLSDRDRADLTRVSEAISVAERRA
MEAERDTIDRYVAAWLSGRIGEAFETRVTGVQRFGLFATIIGLGGDGLVPVSVLGAERFY
HDEAARQLVGESTGTTFAVGDRLQLRLAEANPLTGALKFEPVDGVGAPVEPRGKPSPLKR
KGNHLVGKRGRPANIRHQGRKKR
NT seq 2232 nt   +upstreamnt  +downstreamnt
ctgccatcgaaacagcaggttctcgatttcattcagaactcggaagtccctgcgggcaaa
cgcgaaattgccaaggcattcggcctaaaagggcaggaaaagatcgcgctcaagaaattg
ttgcgcgatatggcggacgaagggctgatcgatgggaagcgcaccgcgttccatctcatg
gggggcgtacccaaggtcactgtcctgcgcattgtcgaaatcgatgatggcgaagcgctg
gccatacccgatagctgggcacctgacgatgccgcgccgccgccgcgcttgcggatcgta
gaacggcgcgggaaagggcctgcgctgcgcgtgggcgaacgggttctcgcgcggacggaa
gaaactggctccggatggctggcccatccgatgaaaaagctgcccaaccagggcgaggct
ttgctgggcgttgtcgagattgatggcaacggcaaaacatggcttgcgcctgtggaccgg
cgtgtgcgccatgccagcgcaatcgcggacctagccggggcggaaaagggcaatctggtg
cttgcagagcccgcggggcggggcccccgcgccggggtccgggttattcaggtgctgggc
gatccgcttgcgccgcgcgcattcagcctgatcgcgatccacaaacatggcatcccccac
atcttctccggtgacgttctggaggaaggcaagcttgccacgcaattgccgctgagcgcg
gagaatcgcgaagacctgcgccacttgcccatcgtcgccatcgatccggcggatgcgcgt
gatcacgatgatgcgatctgggcggaaccggatggggatgggggcttccgcgcggttgtg
gcgatcgcggatgtcagcttttatgtgcggccgggcggcaagctcgaccgggaagcgcgc
aaacgcggcaattcggtgtattttcccgaccgggtcgtaccgatgttgccggaagtcctt
tccgccgatgtctgttcgttgaaagagggcgaagatcgcgccgcgatggtttgccatctg
tcggtgtccaaggaaggccagatcaaatcctggcattttacccgggccttggtgcgcatc
tcggaaaacatcgcctacgaagatgcgcaggcgcgcatcgatagcggcgaggcagaggat
aatctcaagaacctgtgggcctgctggcgggctctggaaagcgcgcgtcacaaacgcgat
cctctggaactggaacttcccgaacgccgggtggtgctggacgaacaaggcaagatcgca
tcgatcgcgatccgcgaaaggctggatgcccatcgcgtggttgaagatttcatgatcgcg
gcgaatgtggccgcagcaaaggcgctggaaagcaaggcgtcgccagttgtctaccgcatt
cacgagccacccagcagggaaaagctggtcgcgctgaaggattaccttgcaacttttgag
cgtaaactggcactcggccaggtgataacgcccggtcttttcaaccgcatgctcaaggat
attgcggatgaaaatgaaaaggcgctgattatggaggcggttctccgcagccagacccag
gcctattacgggccgcgcaatgcggggcatttcgggcttgcattaggctcttatgcgcat
ttcacctcgccaattcgccgctatgccgatttgctcgttcaccgcgcgctggtcgacgcc
ttcggtctcgagcaacccgcgcccaagggcaatctgcccgcaacatcgagcctgtcggat
cgggatcgtgcggatctcacccgggtgagcgaggcgatcagcgtggctgaacggcgggcg
atggaggcggagcgggatacgatcgatcgctacgtggcggcctggctctcgggtcggatc
ggggaagcgttcgaaacacgggttacgggcgtgcagcgttttggcctgtttgccactatc
attgggcttggcggcgatgggctggtgcctgtctccgtgttgggtgcggaacggttttat
cacgatgaagccgcgcggcagcttgttggcgaaagcaccggcacgacgtttgccgtcggc
gatcgtctgcaattacgccttgctgaagcgaatccgctgaccggggcgctgaagtttgag
cctgttgacggtgtcggtgcgcctgtggaaccgcgcggcaagccctcaccgctgaaacgc
aagggcaatcatctggtcggaaaaaggggcagacccgcgaatattcggcatcaggggcgc
aagaaacgctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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