KEGG   Nicotiana tomentosiformis: 104109393
Entry
104109393         CDS       T05025                                 
Name
(RefSeq) eukaryotic initiation factor 4A-3
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
nto  Nicotiana tomentosiformis
Pathway
nto03013  Nucleocytoplasmic transport
nto03015  mRNA surveillance pathway
nto03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nto00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104109393
  09122 Translation
   03013 Nucleocytoplasmic transport
    104109393
   03015 mRNA surveillance pathway
    104109393
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nto03019]
    104109393
   03041 Spliceosome [BR:nto03041]
    104109393
   03009 Ribosome biogenesis [BR:nto03009]
    104109393
   03012 Translation factors [BR:nto03012]
    104109393
Enzymes [BR:nto01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     104109393
Messenger RNA biogenesis [BR:nto03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     104109393
   mRNA cycle factors
    Stress granule specific factors
     104109393
Spliceosome [BR:nto03041]
 Complex C
  Other components
   EJC/TREX
    104109393
Ribosome biogenesis [BR:nto03009]
 Eukaryotic type
  90S particles
   Helicases
    104109393
Translation factors [BR:nto03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    104109393
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_30 Helicase_RecD TniB
Other DBs
NCBI-GeneID: 104109393
NCBI-ProteinID: XP_009616974
Position
Unknown
AA seq 409 aa
MDAAATGSVIPANRRRPPMEEDRLVFETSKGVEPIASFAEMGIKDDLLRGVYQYGFEKPS
AIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQIVDTKSSEVQALILSPTRELAAQT
EKVILAIGDYINVQAHACIGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRTLRTRGIK
LLILDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITSKFMTDPVRILVK
RDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMRENNF
TVSSMHGDMPQKERDAIMAEFRGGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYI
HRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq 1230 nt   +upstreamnt  +downstreamnt
atggatgcggcggcgactggctctgttattccggcgaacaggaggcggccgccgatggag
gaagacagattagtcttcgagacatctaagggcgtggaacccatcgctagtttcgctgag
atgggaattaaagatgaccttcttagaggggtttatcaatacgggtttgaaaagccgtcc
gccatccaacaacgggccgtgctgcctattatatcgggccgtgacgtcatcgctcaggcc
caatccggtaccggaaaaacctccatgattgcactcaccgtttgccaaattgtggatacc
aaatcttcagaggtacaagcattaattttgtcgcctacgcgggagcttgcagctcaaaca
gaaaaggtgattttggctattggagattacattaacgttcaggcacatgcatgtattgga
ggcaaaagcgtaggtgaagatatcagaaaactagagcatggagtacaagtagtctctgga
actcctggaagagtctgtgacatgattaaaaggagaactttacgaactaggggtataaaa
ttattgattcttgacgaatctgatgagatgttgagccgtggttttaaggatcagatatat
gatgtttacagatatcttccaccggagcttcaggttgtactgatttctgccactcttcca
aatgaaattctggagataacaagcaaatttatgacagatcctgttcggattcttgtaaaa
cgtgatgagttgactctagagggcatcaaacagttctttgtcgcggttgagaaagaagag
tggaaatttgatacactttgtgatctttatgatacactcaccatcacccaggctgttatt
ttctgcaacacaaaacgaaaggttgattggctgactagcaagatgcgtgaaaataatttt
acagtctcatctatgcatggagatatgccacagaaggagagagatgctattatggcagag
ttccgaggtggcacgactcgtgttctaatcaccacagatgtttgggcaaggggattggat
gttcaacaggtgtctctggtgattaattatgaccttccaaacaatagagagctgtacatt
catcgcattggtcgctctggtcgttttggtcgaaagggtgttgccataaattttgtgaag
agtgatgacattaaaattctgagagacatagagcaatactatagtacccagattgatgaa
atgcccatgaacgtggctgatttgatatga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (23)   

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