KEGG   Nasonia vitripennis (jewel wasp): 100119339
Entry
100119339         CDS       T01081                                 
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X2
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
nvi  Nasonia vitripennis (jewel wasp)
Pathway
nvi03008  Ribosome biogenesis in eukaryotes
nvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nvi00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    100119339
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100119339
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nvi03019]
    100119339
   03009 Ribosome biogenesis [BR:nvi03009]
    100119339
   03016 Transfer RNA biogenesis [BR:nvi03016]
    100119339
   03036 Chromosome and associated proteins [BR:nvi03036]
    100119339
Messenger RNA biogenesis [BR:nvi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     100119339
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     100119339
Ribosome biogenesis [BR:nvi03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    100119339
Transfer RNA biogenesis [BR:nvi03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    100119339
Chromosome and associated proteins [BR:nvi03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    100119339
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12 Dicer_dimer NAD_binding_4
Other DBs
NCBI-GeneID: 100119339
NCBI-ProteinID: XP_001603129
NASONIABASE: NV10050
UniProt: A0A7M7G3U7
Position
1:32631300..32641068
AA seq 1739 aa
MGVPKFFRYISERYPCLSEKLKEYQIPEFDNLYLDMNGIIHNCSHPNDADATFRITEETI
FKNIFHYIEILFRIIQPQKLFFMAVDGVAPRAKINQQRGRRFRAAKEAEVLEAKARAKGQ
EIPKEARFDSNCITPGTVFMSKLNEQLKYFITYKISTDKLWQKCKIILSGSEVPGEGEHK
IMDYIRYMKAQPDYEGNTRHCLYGLDADLIMLGLCSHEPHFSLLREEVKFGKTQKKILTP
EETNFCLLHLSLMREYLEHEFSPVKDKLTFKFDIEKIIDDWVLMGFLVGNDFIPHLPNLH
IENGALPLLYNAYMDVLPTLDGYINEAGTLNLERFEKFMEKLGKYDLEQFDEIYADLKFF
EAKTGRRLNESERNSKNSPDENASPKKTNKALNALIMATENELGADSDEDLEGESDSDTE
MQLEFVQHKRDYYMNKMEYANVDAETMRSQAEGYIRAIQWNLHYYYNGCCSWSWYYPHHY
APFISDIKNFKDLKLEFDLGEPFKPFEQLLAVLPAASKSLLPTAYHGLMTEEKSPIIKYY
PLDFKTDLNGKKQEWEAVVLIPLIDEKSLLKAMKPCNAKLTPEERKRNSHGPMSIFTFIE
KEQGIYEAPEYFPSIRSYAQMMLVNRDDILVPLERLVKGLCKGVQLSVYYPGFPTLQHIP
HTACLAKAKVKVFEQPSRRENMILTVLPKELPPIDDLARKWLGKTVFIAWPHLVEALVVE
VANSKTKISITYPQPKHATDGNHNFNTESMNDMLLSTFNVQRKSITENYKTRLGIDVGNI
EILIHAAPIMGRQYVYSAQGKMTLEKQWSDVPQAYAYQVVLKDISIHNHDFIQFTSITDV
FKPKSVCFMLGHPHYGAMGEVTEGGVDLKSSRVKVAMRVTSEPNFDRVRQLQADTRMRYM
PGNIAAQRLGISSHLLSRITGTVFVINGEGVDPAHASKYNLGLNLKFNKKNEEVPGYTKK
DINGTWLYSVKAVDFVKSYIQKFPELFERLEMNLVSSDMFLREHLFPNTGAEGVDATVSW
LKEQQKARGTTTRTCGTEELETEVVQAIEKDVDASLEAQRQAGKSVLMQVKPHLLYKPGL
NSGSVPPDPKAQHRFFDRIVCVRDSFTVPLGYKGTIIGVQKNENPLLTMYEVLFDIAFAG
GLVMHGCSSNRSYRLAATDFINISYGLQIENKNSKVNIATSNWRQQQSQQNASSRGPDSW
RQSQPQQHQSPHPPDPTILNSFYPAFTKNGQSNNKRQQGSQQQKQQGQGRHQSGNKAGFN
DSPSHGRKQNLDQQSQFPQPPILLQRSQEPGKKTLPPIQNIQPQQHQHPKGQGPSEFQAL
WNELHKIQKPMDSPKRQAPAPAPEKEKPSPAMNAVTESPQDPSAFLKAMLKISDENTQCQ
IPSSSTAAPPANKPLAFPQMPKTTETPALVQQLFDHARQTEMKSGKSIWYCAQLLSYFQL
LGTGFPRYAYHKNKDNLVCAQVTLPDMRVFCGEFCRTESEAAENTAKKVYEELKLSKMPP
AVSNARPNPLRPPPQQWFDNRMNNVRPPMPPQPNVKPMLPAAFPQVPMMQLPMPKWNPMV
QQNPGFANMMHPGQPHPIQQQQLQQPPQHNRPQQQQHHQQGRFPQPQLVDNAHSRSNRQD
QQKKVTPFVPLQAQKKTRNVVNKQPSNEDNKQQKQQQQQHDKKEKKEVYENKVDQKPKEN
SAEDVKQENVCSNNKTSENTVQNNQGQNAQKGQRSVKQRRSRVAAKFQSDPMANGGDRQ
NT seq 5220 nt   +upstreamnt  +downstreamnt
atgggagtaccaaagttttttagatacattagcgaaaggtacccatgcctcagcgagaaa
ctcaaagaatatcagattcctgagtttgataacttgtatttggatatgaatggcattata
cataactgctctcatcccaacgatgcagatgctacgtttcgtatcacagaggaaactata
tttaaaaacatatttcattatatagaaatattgttccgcattatacagccccagaagctg
ttttttatggctgtggatggtgtggcaccacgtgccaaaattaatcaacagaggggacgc
cgtttcagagctgcaaaagaggctgaagtactagaggcaaaagcacgagctaagggtcaa
gaaattcctaaggaagcaagatttgactctaattgcattacaccaggaacagtatttatg
tcaaaacttaatgaacaattaaagtattttattacatataaaatatccactgataagttg
tggcaaaagtgtaaaattattcttagtggatctgaggtacctggtgagggtgaacacaaa
ataatggattacattaggtatatgaaagcccagccagactatgaaggaaatactcgccat
tgtttgtatggtttagatgcagatctcataatgctgggtttgtgttcacatgaacctcat
ttttccttacttcgtgaagaagtcaagtttggtaaaactcaaaagaaaattttgactcct
gaggagacaaatttttgtcttttacatctgtctctgatgagagaatatctggagcatgag
ttttctcctgttaaagacaaattaactttcaagtttgatattgaaaaaataatcgacgac
tgggttttaatgggttttctagtaggaaacgattttatcccacatttaccaaatttacac
attgaaaatggtgcactgccacttttatataatgcttatatggacgtattaccgacctta
gatggatacattaacgaagctggtactttgaatctcgaacgctttgagaaatttatggaa
aaattgggtaaatatgacttggaacagtttgatgaaatctacgccgaccttaaatttttt
gaagcaaaaacaggtcgacgactaaatgagagtgaaagaaatagtaaaaattctccagat
gaaaatgcatctccaaagaaaactaataaagctttgaatgctttaataatggcaacggaa
aacgagttgggagcagattctgatgaagatctcgaaggtgagagtgattcggatactgaa
atgcagcttgaatttgtacaacataagcgtgattattacatgaataaaatggaatatgca
aatgttgatgcggaaacaatgcgttcacaagcagaaggttatattagagccatacaatgg
aacctgcactattattacaatggatgttgtagttggtcttggtactatccacaccattac
gcgcccttcatctcagacataaaaaatttcaaagacttaaaactagaatttgacttggga
gaacctttcaaaccatttgaacaattgttagcagttcttccagcagccagtaaaagcttg
ttacctacagcttatcatggacttatgactgaagaaaaatccccaattattaagtattat
cccttagattttaaaacagacttaaatggaaagaagcaagagtgggaggcagttgttttg
attcctttaatcgacgaaaaaagtcttttaaaagctatgaagccatgtaatgcaaagtta
acacctgaggaaagaaaacggaattctcatggaccaatgtcaatatttactttcattgaa
aaagagcaaggaatttacgaggctcccgaatacttccccagtatacgaagttatgcacaa
atgatgctagtgaatcgagacgatattttagtgccgctagagagactagtaaaaggttta
tgcaaaggagtccaactaagcgtttactatcctggattccccacattacaacacattcca
cacacagcatgtttggcaaaagccaaggtaaaagtgtttgaacagccttcaaggcgcgag
aacatgattctcactgtactgccaaaagaactgccgccaattgacgatttagctcgaaag
tggcttggcaaaacagtttttatcgcttggccgcatttggtcgaagcattagtcgtagaa
gtagctaattcaaagaccaaaatcagcatcacgtatcctcaaccgaaacatgcaactgat
ggaaaccataatttcaacacagaatcaatgaacgacatgcttctatcgacattcaacgta
caaagaaaatcgataacagaaaactacaaaacccggctaggtattgatgtgggcaatatt
gaaatactaattcacgctgccccgatcatggggaggcaatatgtgtacagtgcacaaggc
aaaatgacactcgaaaaacaatggagtgacgtaccgcaagcatatgcgtatcaggtcgtt
cttaaagacatttcgatacataaccacgattttattcaatttacatcgataaccgatgta
ttcaaaccgaaatccgtctgcttcatgctgggccacccgcattatggtgcgatgggtgag
gtcacagaaggtggagtagatttaaaatcaagcagagtcaaagtggcaatgagagtaaca
tcagaacccaactttgatagagttagacagttacaagcagatacaagaatgagatacatg
cctggcaatatagctgcccagcgtctaggtataagcagtcatcttcttagtcggataaca
ggaactgtttttgtgataaatggagaaggagttgatcccgcgcatgctagcaagtataac
ttgggattgaatttaaagttcaacaaaaagaacgaggaagtacctggatacacgaaaaag
gacatcaatggaacgtggctatacagcgttaaagctgttgattttgtaaaaagttatata
caaaagtttcccgaactatttgagcgtttggagatgaatctcgtatcgtccgatatgttc
ctgagggaacatcttttcccaaatacaggagctgaaggtgttgacgcaacggtttcctgg
ctaaaagaacagcaaaaagcccgtggcacaacgactcgtacttgcggtactgaagaacta
gagaccgaagttgttcaggccatcgaaaaagacgttgatgcaagtcttgaggcccagcgt
caggctggcaaaagcgttcttatgcaggttaagccgcatttgctctacaagccaggtctg
aattcgggaagcgtgccacccgatcccaaggcacaacatcggttctttgaccgcattgtc
tgtgtcagggatagttttacggtaccgctaggatataagggtactataatcggagtgcag
aaaaatgaaaatccgttactcaccatgtacgaagttctctttgacatagcttttgcgggt
ggtcttgtaatgcatggttgttcttcaaaccgaagctacagactggcagctacggacttc
atcaacataagctacggactacaaatcgagaacaaaaactcaaaggtcaacatagccacg
tcgaattggcgtcaacagcagtcgcagcaaaatgcttcttctcgtggtccagattcttgg
cgtcagagccaacctcagcagcatcagtcacctcacccgcctgaccctaccatcctcaac
agtttctacccggcatttacaaaaaatggtcagagcaataacaaacgacagcaaggttct
cagcagcagaaacaacagggtcaaggaaggcatcaaagtggtaacaaggccggtttcaac
gactcgccgagtcacggtagaaagcagaatttggatcagcaatcgcagttcccgcagcca
ccgattttgctacagcgttcccaagaaccaggaaagaagacgctaccaccaatacagaat
attcagccacaacagcatcagcatcctaaaggccaaggaccttccgagtttcaggcttta
tggaatgaattgcataagatacagaaacctatggattcaccgaaaagacaagcaccggcc
ccagctccagagaaagagaagccaagcccagcgatgaatgccgttacagaatcgcctcaa
gacccgagtgcttttttgaaagcaatgttgaaaatttccgacgaaaacacgcaatgccag
ataccgtcctcctcaactgcggcgccgccggcaaacaaacctttagcatttccgcaaatg
ccaaaaacgaccgagactccggctttggtgcagcaattgttcgatcacgcgcgacagacg
gagatgaaaagcggcaagagtatctggtactgcgcgcaactgctgtcgtacttccagttg
cttggtaccggctttcctcgatatgcataccacaagaacaaagataatctggtatgtgcc
caagtgacgctgccagacatgagggttttctgcggtgaattctgtcgcacggaatctgaa
gctgctgagaacactgccaagaaggtttatgaggaactaaaacttagcaaaatgccacct
gcagtcagcaacgctcggccgaatcccttgcgtcctccaccgcagcaatggtttgacaac
cgcatgaacaatgtgcgaccaccaatgcctccacagccaaatgttaaaccgatgctacca
gcagctttccctcaggtaccgatgatgcagcttccgatgcctaagtggaacccgatggtt
cagcagaatcctggcttcgcgaacatgatgcatcctggtcaacctcatcctattcagcaa
caacagcttcaacaaccaccacaacacaataggccgcagcaacagcaacatcatcagcag
ggcagatttccacaaccacagcttgttgataatgcccatagccggtcaaacagacaggat
cagcaaaagaaagtgactccattcgtgccgttgcaagcacagaagaagacgagaaatgtg
gtcaataaacagccgagcaatgaagataataaacagcaaaaacagcaacagcagcagcac
gataagaaagaaaagaaggaagtctacgaaaataaggtggatcagaagcctaaagaaaat
agtgcggaggatgttaagcaggaaaatgtttgcagtaataataaaacttcggaaaatact
gtacaaaacaatcaagggcaaaatgcacaaaagggacagagatccgtaaaacagagacga
tcgagagtcgccgccaaatttcagtcagatccaatggctaatggcggcgaccgacagtga

  All links  
Gene (107)   
   RefGene (103)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   NASONIABASE (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (7)   
   Pfam (7)   
All databases (121)   

Download RDF
DBGET integrated database retrieval system