KEGG   Nicrophorus vespilloides (burying beetle): 108563358
Entry
108563358         CDS       T04922                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
nvl  Nicrophorus vespilloides (burying beetle)
Pathway
nvl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nvl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108563358
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nvl03019]
    108563358
Messenger RNA biogenesis [BR:nvl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     108563358
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     108563358
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind DUF3819 CNOT1_HEAT
Other DBs
NCBI-GeneID: 108563358
NCBI-ProteinID: XP_017777501
Position
Unknown
AA seq 2356 aa
MNLDSLSFTLSQISYLVASINKKNQKQVVADLYKLVDLHGLEADRHLLQCLFSSVDFSET
SSKISAATAHNQVLLDYSSTLLNKPALITSVCYITDNPLNNQKSLKVGPHFFQQLCKCLR
LSPVQEVVFALALLHSSNFDVSSLAQSHLRGCVPSLVQSYIDTEGSGHQQEGGLHETTPE
VLHLILSLIENSPKEVGLSSEVHAALLKALQRDFPKDFVPIVFAPLVYSQQCELAPDIMG
SEGPGLSGGMLDTPLADLVSEMGYGFTSSLEECRNNLVKLKPRDITPAHIARVVSVMSQT
LTGLDQSQMKGGPEIRNTWNIDVFVQALKEVVPNLTWSNVILELDHPDFLIKDRQSLIFL
ITLLRLGLQTSGFHSETFPIDHIYRRWSNIEGQLSLVSNILKNPDVFCFADYPCNPVIVD
VLKTPPELDGKDLANWRSMNVIELLLTISECGWYTQVQELFKYPMQACPDVLVLALLQIN
GPITMLRQELLKALIPIFLGNHPNSAIILHSAWHTQTLNIKTIIMHSMAEWYARGDCDQA
RLSRILDVAQDLKALSMLLNVQSYPFIIDLACLASRREYLKLEKWLTDKVREHGDTFVSA
CIKFLHRRCPQITGKLDELKSQMALPSETLTTMILCIQSCMHTYNMSQECQEAILTMYNN
CTLLIKNRQAQQPTASMLRTHRGMDTGPFNPTNIGQLYNTNSVDSIGNLGTNLANMSLGG
VTNSAFNFSTGLGQLVQSPGSPSRILGTNNNFPIIPLGHQGPVGTGASHVPNAMNALNRI
TPNPGLEKPRIQQDNNLFPEIAPNVSKDIEDEANSYFQRIYNHPPHPTLSIDEVLEMLKR
FQDSNVKREREVFNCMLRNLFEEYRFFPQYPEKELHITAQLFGGIIERGLVTSYMTLGLA
LRFVLEALRKPEGSKMYFFGIAALDRFKTRLKDYHKYCEHVRAIPHFNEFPPHLREYVEY
GLQSMEPPSAPQGPVLPATLAAMLGPASAQGFKSTSATPTAPKASTAAVASLGSRPSIAN
ATNIDTLLVATEQEEKITSPPESLQDKIAFIFNNLSQINLQKKCDELRDIVSEEYWAWIS
QYLVMKRASIELNFHVLYSNFLDVLKVPDVNRMVTRETFRNIKVLLRSDKVIANFSDRSL
LKNLGHWLGMMTLARNKPILQIDIDLKSLLIEAYNRGQQELLYIVPFIAKILESCAKSKV
FKPPNPWTIAIMNVLAEMHQEPDLKLNLKFEIEVLCKTLDIDISQLKPSNILKDPESMRK
IEYQLQTQAGKKDVVQVTSQMALQTSNLNESDMLSGQSTSTPPVPQNNSTTPTSSVAAPE
PRFSYMDIQLTGTTAIQTHVTINQNIVLFQSHPQLKSLVKPSIERAVQEWIIPVADRSIK
IALQTCEQIVRKDFALDPDENRIRTASHYMVRNLTAGMAMITCRDQLLASINSQMKIALQ
SALISATSQQKEMMEQAANIIAQDNMELACAFIQKTAIEKAIPEIDKRLISEFELRKISR
QDGRRYCDAIALTYQAERMPEPIRLKVGGITSTQMTVYEEFARNIPGFLPISDRENNLFI
NKPAVNLEVAVQHPSTPFQVAQASDEMASLCEKLALEVDQFIVATSGQSNYAVMNNTMMM
IRDCLMYTMHNRELGSSIAIVQKCVEGLQDTVVQHNEHDVILKFREITIRILKSLQDPRA
FGQQWVIKQVTRFVTEFRDDVRSNEAAIETLIRAGLVNMQQFDLSLAQFMENGPNYRALN
LGTTLVQNLVIDDRSSNIGESDFYNTIDMMIKINQLIRQPPETLTNILDMLKQHHEQGVF
LGDRTTGGPIVHIHNGILQVRSAPNYEDPPGLVEKTDFLIRDWISVYNSQPTGRDSTKAF
SLFVHQMNCQGILKTDDLITRFFRLSTQLCVESVYRNMSDQNLTGNHLRVKCFNTLDAFV
RLVALLVKHSGDSTNSTTKIHLLNKVLGIVAGCLLQDHEQRGTEFQQFPYHRIFIMLFLE
LNVPEPVLETINMHVLTAYCHTLHILRPSKAAGFCYAWLELVSHRVFMGRMLASTPQQKG
WAMYAQLLIDLFKYLAPFLRNAELAKPVTMLYKGTLRVLLVLLHDFPEFLCDYHYGFCDV
IPPNCIQMRNLILSAFPRNMRLPDPFTPNLKVDILQEIAFGPRVLNNFSSMITPITFKKD
LDSYLKLRAPVTFLSELRSNLQVSNEPGMRYNIPLMNALVLYVGTQAIGFIRGKTLTPNM
QTIAHSSHMDIFQNLAVDLDTEGRYLFLNSIANQLRYPNSHTHYFSCTLLYLFAEANTEA
IQEQITRVLLERLIVNRPHPWGLLITFIELIKNPNYKFWNHEFVHCASEIEKLFESVARS
CFVQKTAIQAEGELQE
NT seq 7071 nt   +upstreamnt  +downstreamnt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttagttgcttctatt
aacaaaaagaaccaaaagcaagtcgtcgccgatttatataagttggtggatctgcatggg
ctagaagccgatcgtcacttgctccaatgcctcttttcgtcggtggacttcagtgaaacg
tccagcaagattagtgcagcaactgctcacaatcaggtgttattagactattcctcaact
cttctaaataaaccagctctaataacgtctgtctgttacattacagataatccattaaac
aatcaaaagagcctgaaagttggacctcatttttttcaacaactgtgtaagtgccttcgc
ctctcacctgtccaggaagtagtgttcgcacttgccttactccattcgtccaactttgac
gtgtcgagtttggcgcagtcacatttgcgtggctgcgtgcccagtctcgtccaatcgtac
atcgataccgaaggtagcggtcaccaacaagagggcggtcttcatgagaccacgcccgag
gtcttacatctgatcttgtccttgattgaaaattcgcccaaggaggtcggactttctagt
gaagtacacgccgccttgctcaaagcgttacaacgtgactttcctaaggacttcgtacca
atcgtcttcgcaccgttagtatattctcagcagtgtgagcttgcgcctgacatcatgggt
tcggaaggccccggtttatccgggggtatgctcgatacaccattggccgatctagtatca
gaaatgggctatggattcacttcatcattggaagaatgcagaaataatcttgtgaagttg
aaacctagagacataacacccgctcatatagcgagggttgtatctgtgatgagccagacg
ttaaccggtttggaccaatcacagatgaaaggaggaccagaaataagaaatacgtggaat
atcgatgtgtttgtgcaggctcttaaggaagtagtgcctaacttgacgtggagtaatgtg
attctagaattagaccacccggactttcttataaaagacagacaaagtttaatttttctt
atcaccctattacggctaggcttgcaaacatctggtttccattctgaaacctttccaatt
gatcatatataccgacgctggtcaaacattgaaggacaactaagtttggtatcgaacatc
ttgaaaaacccagatgtgttttgttttgcagattatccttgcaatccggtgattgtcgat
gttctgaaaactcctccagagctcgatggcaaagatcttgcaaattggcgttcgatgaat
gtcatcgagttactgctgactatttccgaatgtggctggtacacacaggtgcaagaacta
tttaaatatcctatgcaagcttgtcccgatgtactcgttcttgctctgcttcaaataaac
ggacccatcaccatgctaaggcaagagcttttgaaagcattgatacctatatttttgggt
aatcatcccaactctgcaataatccttcacagtgcttggcacacccagacattaaatata
aaaacgattattatgcactcaatggctgaatggtatgccagaggagactgtgatcaagct
agattgtcacgtattctggacgtagcacaagatctcaaagcgctatcaatgttgctgaac
gtgcaatcgtatccattcatcattgatttggcgtgtcttgcatcgcgcagggaatatttg
aaattggagaaatggctgacagataaagtacgagaacatggagacacttttgtgtcggct
tgtatcaagtttttgcatagacgatgtccacaaataactggaaaacttgatgaattgaaa
tcgcaaatggctttgcccagcgaaacgctcaccaccatgattttgtgtatacagtcttgc
atgcatacatataatatgagtcaggaatgccaagaagcaattttgacaatgtacaacaac
tgtacactattaattaagaatagacaagctcaacaaccaacagcatctatgttgagaact
caccggggaatggacaccggacctttcaatccaacgaacataggtcaattgtacaacacc
aattccgttgattcgattggtaacctcggaaccaatttggctaatatgagtctaggtggt
gtgacaaattcggcatttaatttttcgaccggattaggacagttagttcaatctccaggt
tcaccgtcgcgcatcttaggtacaaacaacaatttcccaattattccattgggacatcag
ggacctgtaggaactggtgcttcccatgtacccaatgccatgaatgctctaaacagaata
acgccaaaccctggattagagaaaccacgaattcaacaagataataatttattccccgag
attgcacctaatgtttccaaggacattgaagatgaagccaatagttattttcaaagaatt
tacaatcatccaccgcatcctacgctatctattgacgaagttctagaaatgctgaagaga
ttccaggattccaatgttaaacgagaaagagaagttttcaattgcatgctacgtaattta
tttgaagaatatcgttttttcccacaatatccggagaaagagttgcacattacagctcaa
ttatttggtggtatcatagaaagggggctcgtcactagttacatgacgttaggattggct
cttcgtttcgtactggaggcactacgaaagccagagggttcaaaaatgtacttctttggt
attgcagctctagatagatttaagaccagactgaaagattaccacaagtactgcgagcat
gttcgggcgatacctcattttaatgaatttccaccacatttgcgagagtatgttgaatat
ggattgcagagcatggaacctccttctgctcctcaaggaccggtgttgccggcgactctg
gctgctatgctaggaccagcttctgcccaaggattcaagagcacttcagcaactcccacc
gctcctaaggcgagtacagcggccgttgcaagtttgggtagtcgaccatccattgcaaat
gcaacaaatattgacaccttgctagtggcgacagaacaagaagagaaaatcacttcacct
cccgagagtcttcaggacaaaattgcgtttattttcaacaatttaagccagattaattta
cagaaaaaatgtgatgaattacgtgatattgtttccgaagaatattgggcttggatttca
caatatttagtaatgaaacgagcctctatcgaattaaatttccatgtattatattccaac
tttttggatgtgctaaaagttcccgacgttaatcgaatggtaacaagggaaacgtttaga
aatatcaaagtgcttttaagatcagataaggttatcgccaatttctcagataggtctttg
ctaaaaaatttaggccattggcttggtatgatgaccttagcacgcaacaaacctatttta
caaatagacatagatctgaagagtcttttaattgaagcgtataacagaggtcaacaagag
cttctgtatatagttcctttcattgctaaaatattggagtcatgtgcaaaaagcaaagtg
tttaaaccaccgaacccttggacaattgctattatgaacgtgctcgctgaaatgcatcaa
gagccagatttaaaattgaatctgaaattcgaaattgaagtactatgtaaaacactcgat
attgacattagtcagcttaaaccttcgaacattttgaaagatccagaatccatgagaaaa
attgaatatcagcttcagacgcaagcgggcaagaaggatgtcgttcaagtaacttcgcag
atggctttgcaaacatcgaatctgaacgaatctgatatgctatccggacaatcgacatcc
acaccgcctgtaccacaaaacaacagcactacacccacatcgtcagttgcagccccggaa
ccaagatttagttacatggacatacagttgactggaacaactgctatacagacgcacgtg
actatcaaccaaaatattgttttattccaaagtcatccgcaattgaaatcattggtaaaa
ccatccattgaaagagccgttcaagaatggattattccagttgcagacagatccattaaa
attgcattgcagacgtgcgaacagattgtaagaaaagattttgctctcgatccagatgaa
aatagaatacgtaccgcttcgcattatatggtaagaaatctgactgctggaatggcgatg
attacgtgccgcgatcagttattggcatccattaattcacaaatgaagatagccctccaa
agtgcacttattagcgcaacttcacaacaaaaagaaatgatggaacaagcagctaatatt
attgctcaagataatatggaattggcatgtgctttcattcaaaaaacagcaattgagaaa
gcaattcccgaaattgacaaacgtttgataagtgaatttgagttgagaaaaatatccagg
caagatggaagacgttactgcgacgctatagctttaacataccaagccgagagaatgcca
gaacccatacgccttaaagtcggcggtataacgagcactcagatgactgtttacgaagaa
tttgcacgcaatattccaggattcctgccaatttcagatcgtgaaaataacctctttatt
aacaaacctgccgtcaacttggaggttgctgtacagcatccatcaacacccttccaggtt
gcacaggcttctgatgaaatggcttcactttgtgaaaaattagcacttgaagtcgaccaa
tttattgttgccacaagcggacaatccaattatgccgtcatgaataacactatgatgatg
attcgtgattgtcttatgtacaccatgcataatagggaattaggatcatcaatcgcaatt
gttcaaaagtgtgttgaaggcttacaagatactgtggttcaacacaacgaacatgacgta
attttgaaattccgcgaaattacaatcagaatcttgaaatccttgcaagatccaagggca
ttcggacaacagtgggtaattaaacaagtgaccagatttgttactgaatttcgagatgat
gtccgaagtaacgaagctgcaatcgagacactaatcagggccggattagttaatatgcag
cagtttgatctatctttagctcaattcatggaaaatggaccgaattacagagctttaaat
cttggcactaccctcgtgcagaatttggttatcgatgaccgttccagtaacatcggcgaa
tctgatttctataacacgattgatatgatgattaaaattaatcaattaattcgacaaccg
ccagagacattgacgaacattttggatatgttgaaacaacatcacgaacaaggcgttttt
ctcggagatcgcactaccggtggtccaatagtacacattcataatggaattttacaagtt
cgttctgcgccaaattacgaggacccacctggattagtagaaaagactgatttcctaata
cgcgattggatttcggtttataattctcaaccgactggtcgcgattcgacaaaagcattc
agtttgtttgtacaccaaatgaattgtcaaggcatccttaaaactgacgatctgattacg
agattcttccggctgtccacgcaattgtgcgtcgagtctgtatatagaaatatgagtgac
caaaatctgactggaaatcacttgagagttaagtgctttaataccttggatgcctttgtg
cgtctagtcgcacttctggtgaaacattccggggacagtaccaatagtacaacaaaaata
catttgctcaataaagtacttggcatagtcgctggatgtctgcttcaggatcatgagcag
agaggaaccgaattccaacagtttccatatcaccgcatattcatcatgcttttcttggag
ttgaatgttccagaaccagtgttggaaactatcaatatgcatgtgctgactgcatattgt
catactttgcacattttgagaccttcgaaagctgcagggttctgttacgcttggctggaa
ttagtatcacatcgagtatttatgggcaggatgctagcttcgacgccccaacaaaagggt
tgggctatgtacgctcaattacttattgatctattcaagtatttggctccattcttacgc
aacgctgagcttgccaaacccgtcaccatgctgtacaaaggaactttaagggtgctacta
gttttattacacgatttcccagagtttttgtgtgattatcattatggtttctgcgatgtg
attccaccgaactgcattcagatgcgcaacttgatattgtcggcatttccaagaaacatg
aggcttcccgatccattcactccgaaccttaaagttgatattttgcaagagattgctttt
gggccaagagttttgaataacttttcatctatgattactccaatcacatttaaaaaagac
ctagattcttacttgaaactaagggctccagttacattcttatctgaattgagaagtaat
ttacaagtgtccaatgagccaggaatgaggtataatatccctttgatgaacgcgctggtt
ctctatgtcggcacccaagcgatcggtttcattaggggtaagactcttactccgaacatg
caaaccattgcccacagttcacacatggacatcttccaaaatcttgctgtcgatctggat
accgagggaagatatctgtttctgaattcgattgcgaaccaactgcggtaccccaacagt
catacccattatttctcatgcacactgctttacctattcgctgaagcaaatactgaagct
attcaagaacagattaccagggttctcctcgaaagactcatcgtgaatagaccgcatcca
tggggacttttaatcacattcattgagctgatcaagaatcctaactataaattctggaat
catgagtttgtccattgcgcttcagaaatcgaaaaattatttgaatctgtggcgagatcg
tgcttcgtccagaaaactgcgatccaagctgaaggagagctgcaagagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (89)   
   KEGG ORTHOLOGY (1)   
   RefGene (85)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (102)   

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