KEGG   Octadecabacter arcticus: OA238_c44240
Entry
OA238_c44240      CDS       T02539                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
oar  Octadecabacter arcticus
Pathway
oar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OA238_c44240 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oar03021]
    OA238_c44240 (rho)
   03019 Messenger RNA biogenesis [BR:oar03019]
    OA238_c44240 (rho)
Transcription machinery [BR:oar03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     OA238_c44240 (rho)
Messenger RNA biogenesis [BR:oar03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     OA238_c44240 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_25 NACHT AAA_22 AAA OB_RNB Spore_III_AA AAA_16
Other DBs
NCBI-ProteinID: AGI74306
UniProt: M9RUU6
Position
4706095..4707408
AA seq 437 aa
MTDDVMPAEVPEKIVATDRLNLADLKAQSPKDLLSLAEELEIENASTMRKGDIMFSILKE
RAEDDWIIGGDGVLEVLQDGFGFLRSPGANYLPGPDDIYVSPDMIRLHSLRTGDTVDGVI
QEPSETERYFALTKVEMINFEDPERARHKVAFENLTPLYPDERLIMETADPTMKDRSARI
IDLVAPIGKGQRCLIVAPPRTGKTVLLQNIAHSIAANHPECYLIVLLIDERPEEVTDMQR
SVKGEVVSSTFDEPATRHVAVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTTVPSS
GKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNS
EIVLDRKIADKRVFPAMDILKSGTRKEDLLINKVDLQKTFVLRRILNPMGTTDAIEFLIS
KLKQTKTNSDFFDSMNT
NT seq 1314 nt   +upstreamnt  +downstreamnt
atgactgacgacgtaatgcccgccgaagttcctgaaaaaattgtggcaacggaccgcttg
aaccttgccgatcttaaagcgcaaagcccaaaggatttgttgtccttggcggaagagctg
gagatcgagaacgcgtcgacgatgcgcaaaggcgacatcatgttttcgatcctcaaggaa
cgggccgaagatgattggatcattggcggcgacggcgttcttgaggtgcttcaggacggt
ttcgggtttctgcgctctccgggtgcaaactatctgcccggtccggatgatatttacgtc
tcccccgatatgattcgtctacattccttgcggacgggtgacactgttgacggtgttatt
caggagccatccgagacagagcgttattttgcgctgaccaaggttgaaatgatcaacttt
gaagatccagaacgcgcgcgccacaaggttgcctttgagaacctgacgcctttgtatcct
gatgagcgtctgatcatggagactgctgatcctacgatgaaagaccgttcagcgcgaatc
atcgatcttgtggcccccattggtaaaggccagcggtgtctgatcgttgcacccccacgg
acaggtaagacggtcctgttacaaaacattgcacattccatcgctgccaatcaccctgag
tgttatttgatcgtgcttttgatcgacgagcgccctgaggaagttacggacatgcaacgt
tctgtgaaaggcgaagttgtttcgtcaacatttgatgaacctgcaactcgtcacgtggct
gtgtctgaaatggtgattgagaaggctaagcgccttgttgaacataagcgcgacgttgtc
attcttttggattctatcacacgcttgggtcgtgcgtttaacacgacagttccgtcgtct
ggtaaggtgctgacagggggtgtggacgcgaacgcgctgcagcgcccgaagcggttcttt
ggtgcagcgcgtaacatcgaagaaggtgggtctttgacgatcatcgcaacggccctcatc
gatacgggcagccggatggacgaagtcatctttgaagaattcaagggtaccggtaactcg
gaaatcgtcttggatcgcaagattgctgataagcgcgttttccctgctatggatatcctt
aagtctggtacccgcaaagaggacctgctgatcaacaaagttgatctgcagaaaaccttt
gttctgcgccggatcctgaaccctatgggtaccacagatgcgattgaattcctgatctca
aagttgaaacagacgaagacaaactctgacttcttcgattccatgaacacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system