KEGG   Octopus bimaculoides (California two-spot octopus): 106869676
Entry
106869676         CDS       T04127                                 
Name
(RefSeq) ATP-dependent RNA helicase cgh-1
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:3.6.4.13]
Organism
obi  Octopus bimaculoides (California two-spot octopus)
Pathway
obi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:obi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106869676
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:obi03019]
    106869676
   03036 Chromosome and associated proteins [BR:obi03036]
    106869676
Messenger RNA biogenesis [BR:obi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     106869676
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     106869676
Chromosome and associated proteins [BR:obi03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    106869676
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Caudo_bapla_N CMS1
Other DBs
NCBI-GeneID: 106869676
NCBI-ProteinID: XP_014770983
EnsemblRapid: LOC106869676
UniProt: A0A0L8HMU3
Position
5:complement(15438553..15472035)
AA seq 460 aa
MDSVDDQNLSIGNIGNVNQSLLASIEQNSGAQNANDSGWKAKLNIPERDHRVRTSDVTNT
KGNEFDDFCLKRELLMGIFEKGWEKPSPIQEASIPIALTGRDIVARAKNGTGKTGAYAIP
ILERCDPGRDEVQALVIVPTRELALQTSQICRELSKHIGCQVMVTTGGTNLKDDIMRLYD
QVHVIVATPGRILDLLNKNVVKSSKCSMLVLDEGDKLLSQDFKDMLDSIINHLPGDRQVL
LYSATFPVSVQHFMRKHLNNPYEINLMEELTLKGVTQYYAYVREKQKVHCLNTLFSKLQI
NQSIIFCNTAQRVELLAKKITELGYSCFYIHSKMNQQHRNRVFHDFRQGLCRNLVCSDLF
TRGIDIQAVNVVINFDFPKYSETYLHRIGRSGRYGHLGIAINLITYEDRFNLFKVEEELG
TEIKPIPKMIDKALYVAEYHMEKPEDGPEDGCKQTGQVSK
NT seq 1383 nt   +upstreamnt  +downstreamnt
atggattcggttgatgaccagaaccttagtatcggaaacattggtaatgtcaatcagtca
ttactcgctagtattgaacagaactcaggagcacaaaatgcaaatgattccggttggaaa
gcaaaattaaatatacctgaaagagatcacagagttagaacttcagatgtaacgaacaca
aaaggaaatgaatttgatgacttctgcttgaaaagagaattattaatgggaatttttgaa
aaaggatgggaaaaaccctcaccaattcaggaagctagcatccctattgctctaactgga
agagacattgttgccagagcaaaaaacggaacgggtaaaacgggagcttatgctattccc
attttggaaagatgtgatcctggcagagacgaagtacaagctttggtcattgttccaacc
agggaacttgcactgcaaactagtcaaatttgtcgtgaactcagtaagcatattggctgc
caagtcatggttacaacgggtggtacaaatctcaaggatgatattatgagactttatgat
caggtccatgtcatagtggccacacctgggagaattctcgatttactgaataaaaatgta
gtcaaaagcagtaaatgtagtatgcttgtactggatgaaggagacaaactattatctcaa
gatttcaaagacatgttagactctataataaaccatttgccaggagacagacaagtcttg
ctttattcagcaactttcccagtttctgtgcagcattttatgcgaaaacatttgaataat
ccatacgaaataaatctaatggaggaacttaccttaaagggtgtgactcagtattatgcc
tatgtaagagaaaaacagaaggttcattgtttaaatacactattctcaaagttacagata
aaccagtccattatattttgtaatacggctcaaagagtagaattgttagccaaaaagatt
acagaacttggttattcttgtttctatattcattcaaaaatgaatcaacaacacagaaac
agagtttttcatgattttcgtcagggcctttgcaggaatcttgtctgctcagatttgttc
actagaggcattgacatccaggctgtgaatgtagtaataaactttgattttccaaaatat
tcagagacttatttacacagaattggtagatctggtagatatggccatctaggtattgca
atcaacctaattacatatgaagacagattcaatctcttcaaagtggaagaagagctaggt
actgaaatcaaaccaatcccgaagatgattgataaagcattgtacgttgctgaataccac
atggaaaaaccagaagatggtcctgaagatggctgcaaacagactggccaagtgtcaaaa
taa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (56)   
   KEGG ORTHOLOGY (1)   
   RefGene (51)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (5)   
   Pfam (5)   
All databases (74)   

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