KEGG   Octopus bimaculoides (California two-spot octopus): 106872947
Entry
106872947         CDS       T04127                                 
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20 isoform X1
  KO
K13131  ATP-dependent RNA helicase DDX20 [EC:3.6.4.13]
Organism
obi  Octopus bimaculoides (California two-spot octopus)
Brite
KEGG Orthology (KO) [BR:obi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:obi03041]
    106872947
Spliceosome [BR:obi03041]
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   SMN complex factors
    106872947
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_30 AAA_19 GvpD_P-loop
Other DBs
NCBI-GeneID: 106872947
NCBI-ProteinID: XP_014775615
EnsemblRapid: LOC106872947
UniProt: A0A0L8ID77
Position
5:complement(123426199..123450301)
AA seq 1119 aa
MLPRKVAHNVSNSAVFRTADIAITEDVTFEGLLLSDNVLKGLQNSGFVKPSPIQLKSIPL
GRCGLDLIVQAKAGTGKTCVFTVVALESLQINSPAIQVLVLAPTREIAFQIWQVITSIGS
CVTGLKCATFIGGLSVIDDKNNLKICHIAVGTPGRIKFLIEKGYLRTKSIRLFVLDEADQ
LLDEQFQADINWIYSVLPENKQMLALSATYPEYLAKHLMHYMRNPTYIRLNTSHLALLGI
KQYYLKIPYHPLVQKVAEYSAKAAIKILSSVVFNQCLVFSNLQSGAQSLAVQLEEQGWPT
CCIAGSLDQKERNEAMASLKSFQCRVLVSTDLTSRGIDAENVNLVINLDLPKNPRVYLHR
IGRAGRYGSFGAAITLVAGDVGMKCLKKVEGVCNTSLKPLPDPIPHELISEKTSSPNVSL
DDLVLSETIPTKQDRNCNNLDTESSLTSVKDFSESNPVKYSNHSDKLNNHPVFPSPEIEI
KSNSDQELHYFSDQNSGYVHLEASTGRVLFEAEKTANKDLITEETHGRSINHNNQCNDKM
SIELSESSEVGEGNNNESGEAKIEIFKVCEKQDSSNVSDGLTLDTLNDTECYEQKPEPKI
ASANDVLFHEQTHYDIVKYTGDHHECHSQRNLTAVIPTESNEFQQEHSHVATAAITAVGS
PIEKHDTYVTSTENTDELLVEGHISDVSCIRATNGTPHVLSVDADFVSDNNHHQTSMSQK
SSSSFLNNQVDGLWPWGTIPQYKKSKKVGEYSELCKNFKSFQINDNEPKCENIESLMPTT
APLCLESVPNVGGILNKFYRQSSAKLLNEICDNQATSSSKLQNQNNVNNKDDISEPKMLS
SDGEEASAVVLPLNAVTNVQCAEENLSKDVCITDDANTLVNKGERRRYNLDFEKTNTSAK
FQVSLKRDQVSRELSPNDSVSKLKTENQKTASNAGSLRSQSIDVPQKSVPVKNKSNNLKF
GSVHVQPDRLKEDFSLSEDSDSSTTSDISSSYSEEEDFSEYFSPAEYSFSDSLSSISSNI
NEPHHKTSAGHNPSFPWQSLTGYPLFYPSYPYQYTWANWVPQACQSVSQRRPVLPVPNPF
HSSLITPPASLTQQQFAHSYFQQYNYIQWMVRNSVLQNK
NT seq 3360 nt   +upstreamnt  +downstreamnt
atgctgcctcgcaaagtggctcataatgtgagtaattctgcagtatttcgtaccgcagac
atagcgataactgaagatgtcacatttgaagggttgttattgtcggacaatgtcctgaaa
gggcttcagaattcgggtttcgtcaaaccctcgcctatccagctgaagtccattccactg
ggaagatgtggtttagatttaattgtccaagccaaagctggaactggcaagacgtgtgtt
ttcactgtggttgctttagaatcactgcagatcaacagcccagctatccaggtccttgtt
ttggctccaactcgtgagattgctttccaaatatggcaggtgataaccagtattggtagc
tgtgtaactggcctcaagtgtgccactttcattggtggcttgtctgtaattgatgataag
aataatctgaagatctgccatatagcagttggaactccaggaagaattaagttcttgatt
gaaaaaggctacctgagaaccaaaagtattcgtttgtttgtccttgatgaagctgaccag
ttattagatgaacagttccaagcagacattaattggatatattcagttttacctgaaaat
aaacagatgcttgctctgtctgcaacttatccagaataccttgccaaacacttgatgcat
tacatgcggaaccctacttatatcagactcaatacatcacacctggctttgttaggtatc
aaacaatattatttgaagatcccctaccacccacttgtgcaaaaagttgctgaatatagt
gcgaaagctgctattaagattctgtcttcagtagtgtttaaccagtgtcttgtattctcg
aaccttcaatctggtgctcagagtttggcagttcaactagaagaacaaggttggccaact
tgctgtattgctggttctttagatcagaaagaacgtaatgaagcaatggctagtttgaaa
tcattccagtgccgtgttttagtctcaactgatttgacttcgcgtggaattgatgctgag
aatgtaaatcttgtgataaacttagacctgccaaaaaatcctagagtgtatcttcatcgt
attgggcgtgctggtcgatatgggagctttggtgctgcaataactttggttgctggagat
gttggcatgaaatgtctgaaaaaggttgagggtgtttgtaatacatctctgaaaccactt
ccagatcctataccacatgaacttatatcggaaaagacctcttctccaaatgtttctctg
gatgatcttgttctctcagaaaccattccaaccaaacaagacagaaattgtaacaatctg
gacacagaatcttctttaacatctgtaaaagatttctcagaaagcaatcctgtgaagtat
tccaatcattccgataaacttaataatcatccagtgtttccatctccagaaatagaaatc
aaatcaaattctgatcaagaattacattacttttctgaccaaaattccgggtatgttcat
ttggaagcatccacgggtagagttttatttgaagcagagaaaactgccaataaagactta
ataacagaggaaactcatggaagatctattaaccataacaaccagtgtaatgacaagatg
tctatagaactttcagaatcatctgaagtgggtgagggtaacaataacgagtctggagaa
gctaaaattgaaatatttaaggtatgtgaaaaacaagatagttcgaatgtttctgatgga
cttactctagatacattgaatgatactgagtgttatgaacaaaaacctgagcctaaaatt
gcatcagcaaatgatgttctatttcatgaacagacacactatgatattgttaaatataca
ggagatcatcatgagtgccattcacaaagaaatctaactgctgtcattccaacagaaagc
aatgagttccaacaagaacacagtcatgttgctactgcagcaattactgctgtcgggagt
cccatagagaaacatgatacttatgtaacatcaacagaaaatactgatgaacttcttgta
gaaggacatatttcagatgtttcttgtattagagctaccaatggtactccccatgtttta
tcagtagatgctgattttgtatcagacaataaccaccaccaaacatctatgtcacaaaaa
tcctcaagctcctttttgaacaatcaagtcgatggcctttggccttggggaacgattcct
cagtacaagaaatcaaagaaagttggtgaatattctgaactttgtaaaaatttcaagtct
ttccaaattaatgacaatgagcctaagtgtgaaaatatagaatctcttatgcctacaact
gcccctttatgcttggaatcagtcccaaatgtaggtggcatactgaacaagttttacaga
caatcttcagccaaactgctgaatgaaatttgtgataaccaagctacctcttccagtaag
ctgcaaaatcagaacaatgtcaacaacaaggatgatatctcagagccaaaaatgttgtca
tcagatggtgaagaagcatctgctgtggtgttgcctctgaatgctgtgacaaatgtgcag
tgtgctgaagagaacctttccaaagatgtttgcattactgatgatgcaaacacattggtt
aataagggtgaaagacgacgttataatttagactttgagaaaaccaatacttctgccaaa
ttccaagtttctttaaaaagagatcaagtcagtcgtgaacttagtccaaatgattccgta
tctaaactcaaaactgagaatcaaaagacagcaagcaatgcaggctctttgaggtctcag
tccattgatgtgccacagaagtctgttcctgtaaagaataagagcaacaacttgaaattt
ggttcggtccatgtacaacctgatcgattaaaggaggacttctctttaagtgaggacagt
gattcttcaacaacttcagatatttcaagttcctattcagaagaagaagacttctctgag
tatttttctccagcagaatatagtttttctgattctctttcttccatatcctccaatata
aatgagccacatcacaaaacttctgctggtcacaaccccagttttccatggcaatccctg
actggttatcctttattttatccctcatatccctatcagtatacatgggccaattgggtt
cctcaagcttgtcagtccgtttcacaaagacgacctgtgttacctgttccaaatccattt
cactcttctctcataactccacctgcttcattaactcagcaacaatttgctcattcatat
tttcaacaatacaactacattcagtggatggttaggaattctgttttgcagaataaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (6)   
   Pfam (6)   
All databases (49)   

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