KEGG   Octopus bimaculoides (California two-spot octopus): 106876043
Entry
106876043         CDS       T04127                                 
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
  KO
K07466  replication factor A1
Organism
obi  Octopus bimaculoides (California two-spot octopus)
Pathway
obi03030  DNA replication
obi03420  Nucleotide excision repair
obi03430  Mismatch repair
obi03440  Homologous recombination
obi03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:obi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    106876043
   03420 Nucleotide excision repair
    106876043
   03430 Mismatch repair
    106876043
   03440 Homologous recombination
    106876043
   03460 Fanconi anemia pathway
    106876043
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:obi03000]
    106876043
   03032 DNA replication proteins [BR:obi03032]
    106876043
   03400 DNA repair and recombination proteins [BR:obi03400]
    106876043
Transcription factors [BR:obi03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    106876043
DNA replication proteins [BR:obi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    106876043
DNA repair and recombination proteins [BR:obi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     106876043
   MMR (mismatch excision repair)
     106876043
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     106876043
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 Rep-A_N IBR
Other DBs
NCBI-GeneID: 106876043
NCBI-ProteinID: XP_052832762
EnsemblRapid: LOC106876043
Position
25:complement(1573221..1594222)
AA seq 556 aa
MSYQLTSGALQTIINGENIENPILQILSSKKIPSSAGAERYRLLLSDGQLSYSSVMLATQ
LNSMMEDGSLDNMSVIKVNKYLCNIIQNDKKVIIVLDLSVIAKASEVGQKIGNPKSYRAG
EAAPAATENNTNCVPAASKPPSVSTSNRTPLGSGPVVNNKPPGLPTTPVGGGRIHAIAGL
SLYQNRLFRFSLLFQAYYVSRATLKMANKKFSSVKNDFEMTFNSDTVIELCTENTNLPTI
TYDFRPLKDLDQIEPNTIIDVIGVVTDVADITTVVGRQSNKEFSKRDLQLADQSGMSVRF
TIWGGDAENFQDNKNPVVAVKGAKVSEWGGRTLSLLSSGQMILNPDIREAHFLRGWYDRD
GCNMEFNTFQGDSAGVRGGNEWKTLEQVKTEKLGASKPDYFTSKATVIFIKKGSCMYMAC
PNENCNKKLIDQGDNQYRCEKCNQEFPNFKWRLILSTSIADHTGSQWITCFQECAESILG
VSSDALGNLKDMDEFAFDQVFQEASFKSYIFNLRAKFETYNDESRLKTICVSATPVDWKT
YGQRLIKEINNFGTGE
NT seq 1671 nt   +upstreamnt  +downstreamnt
atgagttaccagttgacttcgggagcattacagactataatcaatggagagaatatagag
aatccaattcttcaaattttgagttcaaaaaagatcccaagttctgctggcgctgaacga
tatcgtcttttattgtctgatggtcagctgagttactccagtgttatgctggcaactcaa
ctgaactccatgatggaagatggctccctggacaacatgtcggttatcaaagtgaacaag
tacttatgtaacatcattcaaaatgacaagaaagttatcattgtgcttgatctatcagtg
attgcaaaagcttctgaagttggacagaagatcggtaatcccaaatcgtacagagctggt
gaagctgcacctgctgctactgagaacaacacaaattgtgttcctgcagcttccaaacca
ccgtccgtttccacatcaaacaggacacctttgggtagtggccctgtcgttaataataaa
ccacctggtcttcctacaactccagtaggaggcggcagaattcatgccattgcaggactc
tcgctctaccaaaataggttattccgtttttctttgttatttcaggcttattacgtgagt
agagccactctaaagatggcaaacaagaaatttagttctgtgaagaatgactttgagatg
actttcaactctgacacagtcattgagttgtgcactgagaacacaaatttgcccaccatc
acatatgattttagaccattaaaagacctggaccaaattgaacctaacactattattgat
gtaatcggtgtcgtcaccgatgttgcagatatcaccacagtggttggacggcaatctaat
aaggaattctcaaagcgtgacctgcaacttgctgaccagtcaggcatgtccgtccgattt
accatttggggaggcgatgctgagaacttccaagataacaaaaaccctgtggttgcagtc
aaaggagctaaagtttcagaatggggaggtcggaccttgtctttattatcaagcggacaa
atgattctaaaccccgacataagggaagctcatttccttcgaggctggtatgatcgagat
ggttgtaatatggaatttaacacttttcagggtgattcagctggtgttagaggaggtaat
gagtggaagacattggaacaagttaaaactgaaaagttaggggcctcaaaacctgattac
ttcacctcaaaggcaactgtgattttcataaagaaaggaagctgcatgtatatggcttgt
cccaatgaaaactgtaacaagaaactcatagaccagggagataaccaataccgatgtgag
aagtgtaaccaagagttccctaactttaaatggcgattgattttgtcgaccagcattgct
gatcatacaggcagccaatggattacgtgtttccaagagtgtgcagaatccattcttgga
gtctcatctgatgcgctgggcaatttaaaggatatggatgaatttgcgtttgatcaagta
ttccaagaagccagtttcaaatcctatattttcaatttgagagcaaaattcgaaacctac
aatgatgaaagccgtttgaagacgatatgtgtcagtgccaccccagttgactggaagaca
tatgggcaacgcctgatcaaagaaattaataattttggaaccggagaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (117)   
   KEGG ORTHOLOGY (1)   
   RefGene (112)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (133)   

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