KEGG   Octopus bimaculoides (California two-spot octopus): 106879324
Entry
106879324         CDS       T04127                                 
Name
(RefSeq) general transcription factor IIH subunit 4
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
obi  Octopus bimaculoides (California two-spot octopus)
Pathway
obi03022  Basal transcription factors
obi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:obi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    106879324
  09124 Replication and repair
   03420 Nucleotide excision repair
    106879324
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:obi03021]
    106879324
   03400 DNA repair and recombination proteins [BR:obi03400]
    106879324
Transcription machinery [BR:obi03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     106879324
DNA repair and recombination proteins [BR:obi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     106879324
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3 Phage_30_8 TraY
Other DBs
NCBI-GeneID: 106879324
NCBI-ProteinID: XP_014784318
EnsemblRapid: LOC106879324
UniProt: A0A0L8G4D3
Position
1:184224863..184243844
AA seq 455 aa
MSATLESGKLECKDLYGYLRTLPANVLDKLYNHPATCLAVFRELPELAKHCVMRILFVEQ
PVPQAVVAHWVANKHHEEQKQAMTAVTDLRVWHEQPLPGGMMGFILNQTFRMNMKTALLG
GGQPWTGGGSLPPDKHVKDIAFLDNYAQDRWECVLHFMVGSSDCVSRDIKWVLLHAGLMK
AESEDQAPVITPNGFQFLLMDTSSQVWFFMLQYLNTLATRGMDLVESLSFLFQLSFSIFG
KDYTTEGMSEAQLRLLQHLREFGLVYQRKRKSQRYYPTKLAINLAAGLSQVSDNAIRQGF
IVVETNYRVYAYTDSQLQIALLALFTEMIYRFPNMVVGQITRDSVRSALSCGISADQIIH
FLKSHAHEKMLEKMPVIPPTVTDQIHLWELERDRFKFTDGVLYNQFLSQSDFELLRDYAR
DLGVLVWDKPSKRVMVVARNGHDEVKRFWKRQKHS
NT seq 1368 nt   +upstreamnt  +downstreamnt
atgtcagcaacattagaatcaggcaaattggaatgtaaagatttatacgggtatcttaga
actttgcctgcaaatgttctcgataaactctataatcatccggcaacatgtcttgctgta
ttcagggaattaccagaacttgccaaacactgtgtaatgagaatactttttgtggaacaa
cctgtacctcaggctgttgtagcacattgggtggccaacaagcaccatgaagaacagaaa
caggcaatgactgctgtgacagatctgagagtttggcacgaacaacctcttccaggtggg
atgatggggtttatattgaaccagacattccgaatgaacatgaagacagctttgttagga
ggtggtcaaccatggacaggtggaggttcccttccaccagataagcacgtcaaagatatt
gcttttttggacaactacgctcaagacaggtgggaatgtgttcttcattttatggttggt
tcatcggactgtgtcagcagagatataaagtgggtcttactacacgcaggtctcatgaag
gctgagtcagaagatcaagctccagtgattacaccaaatggtttccaatttctactgatg
gacacatcttctcaagtctggttcttcatgttacaatacctcaatacactagcaacacgg
ggcatggatttagttgaatctttgtccttccttttccagctgagtttttcaatatttgga
aaggactacacaacagaaggaatgtctgaagcccagcttcgcctcttacaacatttacgg
gagtttggtttagtttatcaaagaaagagaaaatctcagagatattatccaacaaaactt
gctattaatctggctgcaggattatctcaggtttctgataatgcaatcagacaaggtttt
attgtagtagaaacaaattatcgggtctatgcttacacagactcacaactccagattgct
ttattagctttattcacagaaatgatttaccggtttccaaatatggttgtgggtcaaatt
accagagacagtgttcgatcagcgttaagctgtggtataagtgctgatcagataatccac
ttcttaaagagccatgcacatgagaaaatgctagaaaagatgccagttattccaccaaca
gttactgaccagatccacttgtgggagttggaaagagacagatttaaatttacagacgga
gtactctataatcagtttctctctcagagtgactttgaacttctccgcgattatgctcgg
gaccttggtgtattagtctgggacaaaccaagcaagcgagttatggttgtggctcgcaat
ggccacgatgaagtgaaacgcttttggaagagacaaaaacattcatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (51)   

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