KEGG   Octopus bimaculoides (California two-spot octopus): 106881825
Entry
106881825         CDS       T04127                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
obi  Octopus bimaculoides (California two-spot octopus)
Pathway
obi03018  RNA degradation
obi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:obi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106881825
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106881825
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:obi03019]
    106881825
   03041 Spliceosome [BR:obi03041]
    106881825
Messenger RNA biogenesis [BR:obi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     106881825
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     106881825
Spliceosome [BR:obi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    106881825
SSDB
Motif
Pfam: LSM TSA TFIIA ATP11 DUF4407
Other DBs
NCBI-GeneID: 106881825
NCBI-ProteinID: XP_014787825
EnsemblRapid: LOC106881825
UniProt: A0A0L8FQH4
Position
18:complement(15621493..15628476)
AA seq 140 aa
MSLQQQQKRAAPAELQPQQQPQQQQQQQQQQQQQQSVTDKNKERKRKETILDLSKYLDKG
IRVKFSGGREVSGILKGHDPLLNLVLDGTIEYLRDPDDPYKLTEDTRTLGLVVCRGTSVV
SICPADGMEAIPNPFIQQDG
NT seq 423 nt   +upstreamnt  +downstreamnt
atgtcgcttcaacaacaacaaaaacgcgccgctcctgcggaattgcaacctcaacaacaa
ccacagcaacagcaacaacaacaacagcagcagcagcaacaacagtctgttactgacaag
aacaaagaacggaaaagaaaggagactatcttagatttgtctaaatacttagacaaagga
attcgcgtaaagttcagtggcggcagagaagtaagtggtattcttaaaggtcatgatcct
ttactgaatcttgtgttagatgggacaattgaatatcttagagaccctgatgatccatac
aaattaactgaagatactcggacgcttggtttagtagtttgccgaggaacctcagtagta
tctatttgtccagctgatggaatggaagctattccaaatccttttatacagcaagatggt
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (33)   

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