KEGG   Ooceraea biroi (clonal raider ant): 105274899
Entry
105274899         CDS       T05778                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
  KO
K12815  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:5.6.2.6]
Organism
obo  Ooceraea biroi (clonal raider ant)
Pathway
obo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:obo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105274899
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:obo03041]
    105274899
Enzymes [BR:obo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     105274899
Spliceosome [BR:obo03041]
 Complex C
  Other components
   Step II factors
    105274899
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_N HA2_C DEAD AAA_22 AAA_19 nSTAND3 Flavi_DEAD AAA_30 ResIII T2SSE ATPase Sigma54_activ_2 AAA_16 Sigma54_activat PhoH AAA_24 SRP54 cobW ABC_tran AAA_7 AAA_23 AAA_33
Other DBs
NCBI-GeneID: 105274899
NCBI-ProteinID: XP_011329672
Position
1:complement(15925649..15930802)
AA seq 1139 aa
MSDDPSLYRLEGTEGNQVGGLVIRKKTSDHTFKKPSILGLDKLAEQKRREQSQEPSSSKS
HRSEGKDRRYRSYEEETPTYTGGVNSVAQERLESRLKRQRLNADDRVSRNSYRDRERDRD
RDRDRRRDRESRNRESRGRDSSVRQTPLRFKDEPQTPKFRTKDPTSKSNWDDDEDEEPRR
SSWDHPTPNIYGNRDGRDSIRSEFTPSYKYNSWNKEYKSSGATPMVDGEEKELWEEEQQR
LDREWYALDDGENNAFANVSEEYTRKKEMELEARRQKRVSAQQRQINKDNELWERNRMLT
SGVVSSLDHDDDPDDEGEARVHLLVHNVVPPFLDGRIVFTKQPEPVVPVRDPTSDMALVA
RKGSALVKAYREQKERRRAQKKHWELAGTHIGNIMGVHDRRKDDKEHAGQEADFKAGQKY
ARHIGAGEVTGEARHRSIQHQRRSLPVFAVRQELLNIIRENSVVIIVGETGSGKTTQLTQ
YLHEDGYSRNGMIGCTQPRRVAAMSIAKRVSDEMGTALGDKVGYAIRFEDCTSKDTVIKY
MTDGILLRESLREGDLDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATM
DCSKFSAFFGNAATFEIPGRTFPVEVLHAKNPVEDYVDAAVKQVLQIHLQPKSGDVLVFM
PGQEDIEVTCEALKERLAEIESAPPLSILPIYSQLPSDLQAKIFQRSEDNLRKCVVATNI
AETSLTVDGIVFVVDSGYCKLKVYNPRIGMDALQVYPVSRANADQRSGRAGRTGPGQCYR
LYTRRQYLDELLLSGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQDNILNSLYQL
WILGALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASELGCTADILIIVSMLSVPSIFYRP
KGREEDSDSAREKFQVPESDHLTYLNVYNQWKANGYSTTWCNEHFIHAKAMRKVREVRSQ
LEEILKQQKMDVVSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCRTGMPCHLHPTSAL
FGMGFTPDYVVYHELVMTAKEYMQCVTAVDGHWLAELGPMFFSLKETGRSGRAKRRQAMQ
HLHEMEHQMKEAEEEMKARAQEQLEREQASVRKKEILTPGIREPGTPAPYRNTPGRLGL
NT seq 3420 nt   +upstreamnt  +downstreamnt
atgtcggatgatccgagcttatatagattagaggggaccgaggggaatcaagtgggtggc
ctggtgatccgtaagaaaacttcagatcacaccttcaagaaaccatctatactgggtctc
gacaagctcgcggagcagaagagaagggagcagtcgcaggagccttccagctccaagtcg
catagatccgaagggaaggacaggaggtatcgatcttatgaagaggaaacgcccacatac
accggcggtgtcaactccgtggcacaagagagattggagtcgcggctgaagcgtcagaga
ttgaacgcagacgaccgagtctctagaaactcgtatcgcgatcgcgagagggacagagac
cgggaccgggacagacgtagggacagggagagcaggaacagggagagtcggggtagggac
agcagcgtgaggcagactccgctcaggttcaaggacgagccgcagaccccgaaattccgc
acgaaggacccgacctcgaagagcaactgggacgacgacgaggacgaggagccgagacgc
tcgagctgggatcacccgacgccgaacatctacgggaaccgggacggccgcgacagcatc
cgcagcgaattcacaccgtcgtacaagtacaactcctggaacaaggagtacaagagctcc
ggcgccactccgatggtggacggggaagagaaggagttgtgggaggaggagcagcagcgg
ctggacagggagtggtacgcgttggacgacggcgagaacaacgcgttcgccaacgtgtcc
gaggagtacacgcgcaagaaggagatggagctggaagccaggcggcagaagcgcgtgtcc
gcgcaacagcggcagattaacaaggacaacgagctgtgggagcgcaatcggatgctgacg
tcgggtgtcgtgagctcgctggaccatgacgacgatccagacgacgagggtgaggcgagg
gtgcacttgctcgtgcacaatgtggtgccaccgttcctggacgggcggatcgtcttcacg
aaacagccggaaccggtggtccccgtgcgcgatcccacttccgacatggctctagtggca
aggaagggctcggcactagtcaaggcctatcgcgagcaaaaggagagacgcagggcgcag
aagaagcattgggagctggccggcacgcacatcgggaacattatgggcgtccacgatcgg
cgcaaggacgacaaggagcatgcgggtcaggaagcggatttcaaggccgggcagaagtat
gcccgccacattggagcgggggaggtaaccggagaagcccgtcacagatcgattcagcat
cagaggagaagcctgcccgtattcgcggtgcgccaggaactgctgaacatcatcagagag
aacagcgtggtgataatcgtcggcgagaccggcagcggtaaaaccacacaattaacgcag
tatcttcacgaggacggctacagtcgtaatggtatgatcggttgcacgcaacccaggaga
gtcgccgcgatgtcgattgcgaaacgagtgtccgacgagatgggcaccgctctaggtgac
aaggtcggatacgcgatacgtttcgaagattgcacttcaaaggataccgtcattaaatac
atgactgacggtattttactgagggagagcttgagagagggagatctggatcgctatagt
gtgataataatggacgaagcccacgagcgatcgctttcaacagatgtattattcggtctt
cttcgagaggttgttgctaggcgccacgatctaaagttgatcgtaacttccgcgacgatg
gactgcagcaaattttccgcattcttcggcaacgcggcaacgttcgagataccagggcgc
acatttcccgtcgaggtgttgcacgcaaagaacccggtcgaggattacgtggacgcggct
gtgaagcaagtcttacagatccacttgcagccgaaaagcggcgacgtactcgtcttcatg
ccaggccaggaggacatcgaggtcacctgcgaagcgctgaaggaacgattagccgagatc
gagtcggcgccgcctctctctatcctgccgatctattcccagctgccgtcagatctgcag
gcgaagatcttccaacggtccgaagacaatcttcgcaaatgcgtcgtggcgaccaacatt
gcagagacatcgctgaccgtcgacgggatcgtctttgtcgtcgactccggttactgcaag
ctcaaagtctacaatcctcgtataggtatggacgccctccaggtgtatcccgtgtcgcgc
gcaaacgccgatcagagatccggacgagccggtcgtactgggcccggtcagtgttaccgg
ctttacactagaaggcagtacctcgacgagttgttgctgtcgggagtacccgagatccaa
cggaccaatctggcgaacacggtgctgctgctgaagtcgctgggcgtgcaggacttgctg
gcgttccacttcatggacccgccgccgcaggacaatatactgaactccctgtatcagctg
tggatcctgggcgcgcttgatcataccggacgcctgacgcccctcggccggcagatggcc
gagttccctctcgacccgccacagtgccagatgctgatagtcgcctctgaactcggttgc
actgcggatattctcatcatcgtctccatgctgtcggtaccgtcgatcttctatcgacca
aagggccgcgaggaggactcggactcggcgcgcgagaagttccaagtgcccgagtcggac
catctgacctacctgaacgtgtacaaccaatggaaggcgaacggctactcgaccacctgg
tgcaacgagcacttcatacacgcgaaagcgatgcgcaaggtgcgtgaggtgcgctcgcag
ctcgaggagattctcaagcagcagaagatggacgtcgtcagctgcggcaccgactgggac
atcgtgcgcaagtgcatctgctccgcgtactttcatcaggcggcgcgcctcaagggaatc
ggcgagtacgtcaattgccgtaccgggatgccgtgccaccttcatcccacctcggcgctg
ttcggcatgggcttcacacccgattacgtcgtttatcacgagctcgtgatgaccgccaag
gaatacatgcagtgcgtcactgcggtggacggtcactggctggctgagctgggtccgatg
ttcttcagcttgaaggagacgggtcgcagcggccgcgcaaagcgccgccaggcgatgcag
cacctgcacgagatggaacatcagatgaaggaggccgaagaggagatgaaggcgcgcgcc
caggagcagctcgagcgcgagcaggcgtcggtgcgcaagaaggagattctgacgcctggc
atccgggaaccgggtacccccgctccgtatcgtaacactcccggacgattaggactctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (24)   
   Pfam (24)   
All databases (36)   

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