KEGG   Ooceraea biroi (clonal raider ant): 105279251
Entry
105279251         CDS       T05778                                 
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1
  KO
K12820  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
Organism
obo  Ooceraea biroi (clonal raider ant)
Pathway
obo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:obo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105279251
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:obo03041]
    105279251
   03009 Ribosome biogenesis [BR:obo03009]
    105279251
Enzymes [BR:obo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     105279251
Spliceosome [BR:obo03041]
 Complex A
  U2 snRNP components
   U2 related factors
    105279251
 Complex B
    105279251
 Complex C
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-SnRNP related factors
    105279251
Ribosome biogenesis [BR:obo03009]
 Eukaryotic type
  90S particles
   Helicases
    105279251
SSDB
Motif
Pfam: OB_NTP_bind HA2_C HA2_N Helicase_C DEAD AAA_22 AAA_19 SRP54 nSTAND3 ResIII AAA_7 ABC_tran Flavi_DEAD AAA_30 AAA_16 T2SSE
Other DBs
NCBI-GeneID: 105279251
NCBI-ProteinID: XP_011337204
Position
7:7897818..7905340
AA seq 719 aa
MSKRRIEVVDPYVKRKATDGSTSNNVATTASTATKSQVQFNPYTMLPYTPKYYELYKKRI
TLPVFEYRADFMRLVSQHQCIVLVGETGSGKTTQIPQWCVEYSRSIGSKGVACTQPRRVA
AMSVAQRVSEEMDVALGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLDAYQVI
LLDEAHERTLATDLLMGVLKEVIKQRLDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTH
PVEIFYTPEPERDYLEAAIRTVIQIQMCEEIPGDLLLFLTGQEEIEEACKRIKREMDNLG
PEVGELKCIPLYSTLPPNLQQRIFEAAPPTKSNGAIGRKVVVSTNIAETSLTIDGVVFVI
DPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNEMQDN
TYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTD
LGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNESKKAADDAKMKF
AHIDGDHLTLLNVYHSFKQHMEDVHWCYDNYVNYRSLKSGDNVRQQLSRIMDRFVLKRTS
TDFNSKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQIVQLHPSSCLDHKPEWVIYN
EFVLTTKNYIRTVTDIKPDWLLMIAPQYYDLQNFPQCEAKRQLEMIQAKLDSKQYQEGF
NT seq 2160 nt   +upstreamnt  +downstreamnt
atgtcgaagcgcaggatcgaggtcgtggacccgtacgtcaaacgaaaagccacggacggt
tcaacgtccaacaatgtggcgaccacagcgtcgacggcgacgaagagccaagtacaattc
aacccatacaccatgctgccgtacacaccgaagtactatgaactttataagaaaagaata
actctgcctgtgttcgagtatcgtgctgatttcatgagattggtgtcccagcaccaatgc
atcgttctcgtcggagagacaggatctggcaagaccacacaaataccgcaatggtgcgtc
gaatattcaaggagtattggatccaaaggagtcgcctgcacacagccgaggagagtggcg
gcaatgagcgtcgctcaaagagtgtcagaggagatggatgttgccttaggccaagaagta
ggatacagcatccgttttgaagattgtagttccccgaaaactgtgttgaagtacatgacc
gatggtatgttacttcgtgaaggtatgtccgatcccatgctggatgcttaccaagtgata
ctgctcgatgaagcgcacgaaagaacgttagccaccgacttgctcatgggtgttttgaaa
gaagtgattaaacagagactggatttgaaacttgtgattatgagtgccaccttagacgcc
gggaagtttcagcagtacttcgataacgcacctctcatgaacgtacctggtagaacgcat
ccggtcgagatattttacacgccggagccggagagagattacctagaggctgcgatcagg
accgtcatccagatccagatgtgcgaggagatccccggcgatctcttgctgtttttgact
ggccaggaggaaatcgaggaggcgtgcaagagaatcaaacgagagatggacaacctggga
cctgaagtcggcgaactgaagtgtataccgttgtactcgacgctgccgccgaatctccag
cagagaatattcgaagccgctccacctaccaaatctaacggcgctatcggtcgtaaagtc
gtggtgtcgaccaatatcgcagaaacatcgttgaccatcgacggagtcgtcttcgttata
gatcctggttttgccaagcaaaaagtgtacaatccgcgaatccgtgtcgagtctctctta
gtgtcgcctatcagtaaagcctccgcgcaacagagagccggacgtgctggtagaacgagg
cccgggaagtgtttcagattgtatacggagaaggcgtacaaaaacgagatgcaggataac
acgtatcctgaaatcttgcgttccaatctcgggagcgtggtgctgcaactgaagaaactt
ggcatcgacgatttggtgcatttcgattttatggacccgcccgcaccggagactctcatg
cgagcgttggagctcctgaattacctggcagctctcgacgacgatgggaatttaacggac
cttggcgcagttatggcagaattcccattggatccccagttggcgaaaatgctcatagcg
tcttgcaatcacaattgtagcaacgagatactcagtatcaccgctatgctttcagtccca
cagtgctttgtgagaccgaacgaatcgaagaaggctgccgatgatgcaaaaatgaagttc
gcgcacattgatggcgatcatctgacgttacttaacgtgtatcattccttcaagcaacat
atggaggatgtccattggtgctacgacaattacgtgaactaccggtcgttaaagagtggc
gacaacgtgagacagcaattgagtagaataatggatagattcgtgttgaagcgcacgtcg
acggacttcaactcgaaagactattacatcaacatcaggaaagctctcgtcaatggcttc
ttcatgcaggtggcgcatttagagagaacaggacattatctaactatcaaggataatcag
atagtgcaattgcatccgagtagctgtctggatcataaaccggaatgggttatttacaat
gaatttgtgctcactaccaagaattacattagaacggtcaccgacatcaaacccgactgg
ttgcttatgatagcaccacaatattacgatctacaaaatttcccccaatgcgaggcgaag
aggcaactcgaaatgattcaagcgaaattagactcgaagcaatatcaggaaggcttctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (16)   
   Pfam (16)   
All databases (29)   

Download RDF
DBGET integrated database retrieval system