KEGG   Ooceraea biroi (clonal raider ant): 105286821
Entry
105286821         CDS       T05778                                 
Name
(RefSeq) symplekin isoform X2
  KO
K06100  symplekin
Organism
obo  Ooceraea biroi (clonal raider ant)
Pathway
obo03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:obo00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    105286821
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:obo03021]
    105286821
   03019 Messenger RNA biogenesis [BR:obo03019]
    105286821
Transcription machinery [BR:obo03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     105286821
Messenger RNA biogenesis [BR:obo03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     105286821
    U7-dependent histone pre-mRNA processing factors
     105286821
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N F420_oxidored
Other DBs
NCBI-GeneID: 105286821
NCBI-ProteinID: XP_011350355
Position
14:3419737..3426586
AA seq 1112 aa
MDPRLHRRSEPEKGPDDRIVEWLNEASISTTEDVKVANMCKIQEFLLNKEPHLLQLYLDD
VLQFSLDRSAEVRKTVTGFIEEAGIKHSEAIPRIVQILLRLASDEAPVVAKRALRASNRI
LRAALKWIASATVVTPEMELAWTQLSALKIQIINMIDSDNDGIRTQAVKFLEGVVLIQTY
PDPDCPKKPDDFSLEDIPLTLKIARRRKLEEEANHVMDLLIKFHGSPHVSSVNLMTCMGS
LALIAKMRPQFMPNVIQALQRLQHDLPPTLSDSQVTSVQKQLKLTLLGLMKHPASIEYAS
TIAKQLTQLGAKEQEIIKAYPKPEDVRRMKKRQQEAAAASAAKRVKIENVLIADEAEAVP
TPVPPPKLPELIELSETFIAERLSVEIATDLVMDSMAWVPDTMTTIFQREYQPSATTDIN
IQRQTIAKLLAMQIKQTKAKKNKKDAKDEDAVMEDLIKNPTISVAEAKRERKREKDREKE
KEAKASLEAHEKSLAKARNRLKMLKLGEVTKPLPKEVKERMLLMAVNRILLSEKTAVLGG
VSPVRSKILTTLAATFNPYIKEAVLRYITDDMRNRLDLALGWLYEEYALLQGFQRRTTLC
TKPQEAPHQAYNFLLCTLVSAIDSVQGKDRDALLSRLYLEAPLITEDAVEALKLISSDET
RGLAPLQLLKEMVVRRPTKQLVFLNVLLCHTGHENNTIRETAIQLVCQLYSRPELSKLIE
EYAVLYLGFLRLHNPPEIVFGQDRGRPQIENQWSDSTTRACLGLYLALLSEHQDLIHELA
RVYTSMGADVKRIVLRLVEGPVRSLGMGSPQLLALVENCPKGSETLVTRIIHILTEKSAP
SAELVARVRELYQTRVSDVRFLIPVLNGLTKKEVIAALPKLIKLNPIVVKEVFTRLLGTH
NNESGVPHTSPITPAELLIALHNIDPSKAELKTVIKATSLCFNEKQVYTQETVAVVMQHL
MEMTPLPTLLMRTVIQSLSLYPRLSGFVMNILQRLILKQVWKQPKVWVGFVKCCERTQPQ
SFAVILQLPAAQLAEALRMANNLRAPLLDHVEAFTENQKAHIPQSIMDVIQGKVPCDMHD
EFDIAPPGDYSNDQKPDTMEIDLSEPAPPGLD
NT seq 3339 nt   +upstreamnt  +downstreamnt
atggatccacgtttgcacagaagatccgagccggaaaagggaccggacgatcggattgtt
gaatggttaaatgaagcctccataagtaccaccgaagatgtgaaagtagcaaatatgtgc
aagatacaagagtttttgttaaataaggagccccatttgttacaactctatttagatgat
gtgctacaattttcactagataggagtgccgaagtcagaaagactgttacgggattcatc
gaggaagctggaataaagcattcagaggcaattcctcgcatagtccaaatactcctcagg
ctagcgtcggacgaagctccggttgtagccaagcgagctctcagagcgagcaacaggatt
ttgagagctgcccttaaatggatcgccagtgccactgttgtcacgcccgagatggagttg
gcgtggacgcagctaagtgctcttaaaattcagatcataaacatgattgacagtgataac
gatggaataaggacacaagccgtcaagtttcttgagggtgtggtcttaatacaaacctat
ccggatcccgactgtccaaagaagcccgatgacttttctctggaagacattccgctgacg
ctgaagatagctcgtaggcggaagttggaagaagaggcgaatcatgttatggacctgctg
attaaatttcacgggtctccgcatgtcagcagtgtcaacttgatgacatgtatgggatcg
ttggcactgatcgccaaaatgaggccacagttcatgccgaatgtgatccaagcgttacag
aggctgcagcatgatttaccgccgacgctgtccgattctcaagtaaccagcgtgcaaaag
cagttgaagcttacgctgcttggcctgatgaaacatcccgccagcatagaatatgcttcg
accatagcgaagcaactgactcagctcggcgcgaaggagcaggagattatcaaggcttac
ccgaaaccggaggacgtgcgtcggatgaagaagcgccaacaagaggcggcagctgccagc
gcggcgaaacgagtgaaaatcgagaacgttttgatagccgacgaggcggaagcggtgcca
actcccgtccccccgcctaaattaccagaactaattgaactttctgaaacttttattgcc
gagaggctcagcgtagagattgcgacagatttagtgatggacagtatggcatgggttccg
gatacgatgactactatattccaaagggaatatcaaccctccgcgaccactgacatcaat
atacaacgtcaaacaatcgctaaactcttagcgatgcagatcaagcagacgaaggcgaag
aagaacaagaaagatgccaaagacgaggacgcggtgatggaggatttaattaaaaatccc
accatcagcgtggccgaggcgaagcgcgagcgtaaacgcgagaaggatcgcgagaaggag
aaggaagcgaaagcgtcgttggaggctcacgagaagtctctcgcgaaagcgcgaaatcgt
ctgaagatgttaaagttgggcgaagtgacgaagccgcttccgaaggaggtcaaagagcgt
atgctgctgatggcagtcaacagaatattgctctcggagaagaccgccgttcttggcggc
gtgtctcctgtgagatcgaaaatcttgactacactggcagctacctttaacccttacatc
aaggaagccgtattacgttacatcaccgacgacatgcgaaaccgattggacttggctttg
ggttggctatacgaggaatacgcattgctgcagggattccagagacgaaccacgctgtgt
acaaagcctcaagaagctccgcatcaggcgtataactttttgttgtgtactttagtctcg
gctattgactcggttcagggtaaagatcgtgatgctttgttatccagattgtatctggaa
gcgccgttgataacggaggacgcggtggaagctttgaaactgatctcgtctgatgaaact
agaggtctcgcgccgctgcaacttctgaaagagatggtagtgcgtaggccaacgaagcaa
ctggtattcctgaacgttttattgtgccacactggacatgaaaacaatacgatacgagag
actgcgatacagctggtctgccagttgtacagcagaccagaattgagtaagctgatcgag
gagtacgcggttctgtatctgggcttcctgcgcctgcacaacccacccgagatcgtgttc
gggcaggataggggcaggccgcagattgaaaatcagtggagcgattcaaccacgcgtgcc
tgtttaggattgtatcttgcgcttctcagtgagcatcaggatctcattcacgaattggcg
agagtgtacacatcgatgggagcagacgtgaagcggattgtgttaagactagtggaaggg
ccagtgagatctttaggcatgggtagtccgcagctgttggcactcgtcgagaactgcccg
aagggatccgaaactctagtcacgagaatcatacatattcttacagaaaagtctgctccg
agtgcggaattggtagccagggtacgagaactgtatcagaccagagtctccgatgtgaga
ttcttaatacccgttctgaacgggctcacgaagaaagaagtgatcgccgcacttccaaaa
ttaattaaactaaatcccatcgttgtaaaagaggtgttcaccagattgcttggaacgcac
aacaatgagagcggtgtacctcatacgtcgcctattacacccgcagaattgttaatagct
ttgcacaacatagatcccagcaaggctgagctgaagactgttatcaaagcaacgtcgctt
tgcttcaacgagaagcaggtctacacgcaggaaacggtcgccgtggtgatgcagcatctt
atggaaatgacaccgctaccaacattactgatgcgcacggtcatacagagcctgtccctt
taccccaggctcagcggattcgtgatgaacatacttcagcgcctgatcctgaagcaggtg
tggaagcagccgaaagtgtgggtaggcttcgtcaagtgctgcgagcgcacgcaaccgcaa
agtttcgccgttatcctgcaactaccagcggcgcaattggcggaggcgctgcgaatggcc
aacaatttgcgtgcccccttactagatcacgttgaggcgttcaccgagaatcagaaagca
cacattccgcaatcgataatggatgtgatacagggtaaggtaccctgtgacatgcacgat
gagtttgatattgcgccgcctggtgattattcgaatgatcaaaaaccagatacaatggaa
attgatctttcagaaccagctcctcccggtttagattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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