KEGG   Oryza brachyantha (malo sina): 102709953
Entry
102709953         CDS       T02995                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
obr  Oryza brachyantha (malo sina)
Pathway
obr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:obr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    102709953
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:obr03021]
    102709953
Enzymes [BR:obr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     102709953
Transcription machinery [BR:obr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     102709953
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 102709953
NCBI-ProteinID: XP_040383192
Position
8:complement(2879016..2886752)
AA seq 1233 aa
MEDSEITDQLSPNITSTEMDFMDVDDTGGGNEKLFPMDVDLRSIPSLKDGGHAEPPVLVP
VGKSPMDVDLRAIQSLQDPSVKVPLDKSIASLEKLCKEASRSFFRETRLVSHQINSYNDF
VSHGLQKMFVSLEEVTVDPDYDPSKKAGPWRHATIKFGRVELEEPVFWSDNTDLDEQTLK
LKPKHARLQKMTYSSKMKVEMTVQVYSLDKSDKAKTGDDPFIQRKDIMKETKWVTIGRLP
VMVKSNLCWLHKLQESECEYDFGGYFLIKGMEKVFIAEEQKVLSRIWINDRPIWEACYQR
SQIQREKISVKLVQSNDGFRKVINLYFLSATIPIWIMFSALGISSDKEAFDIIDIPECYA
SVANIISSTITESYEKCEGFHGGDRASQYIDKLIRNTKFPPKGSFDEYIGRYMFPDVSGN
RSKALFLGYLVRCLLMAYSGNRKCDNRDDFRNKRLDLPCELLQRELWGHVMHAKRRMVKV
MQRHLNGGDDLQPLERYVDASIVTNGLNRAFSTGSWRHPYNKSERCSGIVATLRRTNPLQ
MMSDLRKTRQWVAYAGKAGDARYPNPSYWGKICFLSTPDGEKCGFVKNLAVTAIVSCSVR
EPLVDMLVSCGMKKLDGLLLQEISGKDRIFLNGSLVGVCPDPDEFALRFRSMRHSKQIDP
QVGIKRDRQDKEVRIFSDSGRILRPLLIVENLRKIMKPKDGSYSFQELMDQNIIELIGVE
EEEDIRCACGIRHLFAGDEEESFSFYTHCELDPSFLLGLSCSIIPFVNHNNAKRILMQAE
KISQQAIGYFTTNPLFRVDTLSHQLYYPQKPLFKTVAADCLGKRDYKSGSKHDFVRPEYF
NGQNAIVSISVHQGFNQEDSLVMNRSSLERGMFRTQHFKSYKALLENKEVTKRLKYKEKI
NFGKIPSKKGRVDSLDIDGLPYLGASLQTSDIVIGKVSDSGEDHSIKLLHTEKGIVEKVV
LSANDDGMNSAIVTLRQSRSPCVGDKFASMHGQKGVIGFLDSQENFPFTQQGIVPDIVIN
PHSFPTRQTPGQMLEAALGKGIALGGTVRYATPFTCPSLEVITEQLHRAGFWRWGGESVV
NGRTGERMRSAVFMGPTFYQRLTHMAEDKVKFRSGGPVHPLTRQPVEDKRRYGGVKFGEM
ERDCLLAHGAAANLHERLFLLSDLSRLHVCAACRRFAGVVSRPAAGSRLRGAYCGFCRSA
ENLVRVAVPYGAKMLYQELFAMGICLKFDTELI
NT seq 3702 nt   +upstreamnt  +downstreamnt
atggaagactctgaaattactgatcagctgtcaccaaatatcacaagtactgagatggat
ttcatggatgtggatgacactggtgggggcaacgagaaactgtttcctatggatgtggat
ttgagatcaataccatctctaaaagatggagggcatgcagagccaccagtgctagttcca
gttggcaagtctcctatggatgtggatttgagagcaatacaatctctgcaagatccatca
gtaaaagtcccacttgacaagagcattgcaagcctagagaagctctgcaaagaggcatca
aggtcatttttcagggaaaccaggctagttagccatcagataaactcctacaatgatttt
gtctctcatgggcttcaaaagatgtttgtttctttggaggaagttactgttgatcctgat
tatgacccttcgaagaaagcaggtccctggaggcatgcaaccatcaagtttggtcgagtg
gaacttgaggagccagtgttttggagtgataacactgatcttgatgagcagacactcaaa
ctgaagcctaaacatgctcgcctccagaagatgacatactcttcaaagatgaaagtagaa
atgactgttcaggtctattcacttgacaaaagcgacaaggctaaaactggcgatgaccca
tttatccaaagaaaagatataatgaaagaaactaaatgggtcaccattggcagattacct
gtcatggtgaagtcaaatttgtgctggctgcataaacttcaggaaagtgaatgcgagtat
gattttggtggatattttctgatcaagggaatggaaaaggtattcattgctgaagagcag
aaagtcttgtccaggatttggatcaatgacagacccatctgggaggcttgttaccagcgg
tctcaaatccaacgagaaaagatttctgttaaacttgttcagtctaatgatggtttcaga
aaagtcattaacctatacttcttgagtgcaactataccaatctggataatgttttctgca
ctaggtatatcgtcagacaaggaagcttttgatattattgacataccagaatgctatgct
tccgtggccaacataatatcatctaccataactgaatcttatgagaagtgcgaaggcttt
catggaggagatagagccagtcaatacattgataagttgataaggaatacaaagtttcca
ccaaaaggatcctttgatgagtatattggtaggtacatgtttcctgatgtaagtgggaat
aggagcaaggcactcttcttgggatacttggtgagatgtcttctgatggcttactccggc
aatcggaagtgtgataatagggatgatttccgtaacaagaggctggatctgccatgtgag
ttgctccagagagagctatggggacatgttatgcatgccaagagacgcatggtcaaggtc
atgcagagacatctgaatggtggtgatgacctacagcctcttgagcgttatgtcgacgca
tcaattgtcactaatggtctcaaccgtgccttctccactggttcttggcgccatccatac
aataaaagtgagaggtgttcagggattgttgcaacccttaggagaacaaatcctcttcag
atgatgtctgacttgaggaagacacggcaatgggttgcatatgctggaaaggctggagat
gctagatatccgaacccatcgtattgggggaagatatgtttcttgtccactcctgacggc
gaaaaatgcggatttgtgaaaaatctggctgttactgctattgttagttgttctgtaagg
gagcccttggttgacatgcttgtttcttgtgggatgaagaaactagatggacttcttcta
caagagattagtgggaaagacagaatcttcttgaatggaagtttggttggagtgtgccca
gacccggacgaatttgctttgcgttttaggagcatgaggcatagcaaacaaattgatcca
caggtggggatcaaaagggacaggcaagacaaagaagttcgcatattttctgattcagga
agaattctaaggcctctccttatcgttgaaaatctaaggaaaatcatgaaaccgaaagat
gggtcatactcttttcaggaacttatggatcaaaatataattgagctgattggtgttgag
gaagaggaggatatccgatgtgcttgtggaattaggcatctctttgcaggggatgaagag
gagagtttctcattttatactcattgtgaacttgacccttccttcttgctagggttgagt
tgcagtatcattccctttgtgaaccacaacaatgctaagagaattctaatgcaagctgaa
aagatatcacagcaggctattggatacttcactacaaatcctctctttagagttgataca
ctttcccatcagctctattatccacagaaacctctgttcaaaactgtagctgctgactgt
cttggtaagagagactacaaatctggaagcaaacatgactttgtcagaccagagtatttc
aatggccaaaatgcaatagtctcaatcagtgttcatcagggatttaaccaagaggattct
ctggtgatgaacaggtcctctttagagcgtggcatgtttcggacacaacatttcaaaagc
tataaagcactgctagaaaacaaagaggtcaccaaacgattgaaatacaaggaaaagatc
aattttggaaaaattcctagcaagaaaggccgggttgacagtttagatattgatggctta
ccatatttaggagcaagtcttcagactagcgacattgtcattggaaaggtctcagattct
ggtgaagatcacagcatcaagctgctgcatactgaaaaggggatagtggagaaggttgta
ctttcagctaatgatgatgggatgaattctgcaattgttactctaagacagtctcgctcg
ccttgtgtcggagacaaattcgccagcatgcatggccaaaaaggagttattggtttcttg
gattcccaggagaacttcccctttactcagcaaggcatagttccggacattgtgatcaat
ccccacagctttccaactcgtcagactcctggacagatgcttgaagctgcactgggtaaa
ggaattgccctcggcggcacggtccggtatgccacaccattcacctgcccttctctggaa
gtgatcacagagcagctgcacagggctggattctggaggtggggaggggagagcgtggtg
aacgggcgcaccggcgagcggatgaggtcggcggtgttcatggggccgacgttctaccag
cggctcacccacatggcggaggacaaggtgaagttccgcagcggcgggcccgtccacccg
ctcacccgccagcccgtggaggacaagcgccgctacggcggcgtcaagttcggcgagatg
gagcgcgactgcctcctcgcccacggcgccgccgccaacctccacgagcgcctcttcctc
ctcagcgacctctcgcgcctgcacgtctgcgccgcctgccgccgcttcgccggcgtcgtc
tcccgccccgccgccggcagccggctgcgcggcgcctactgcggcttctgccggtcggcg
gagaacctcgtgcgcgtcgccgtgccctacggcgccaagatgctctaccaggagctcttc
gccatgggcatctgcctcaagttcgacacggagctcatctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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