KEGG   Oryza brachyantha (malo sina): 102712716
Entry
102712716         CDS       T02995                                 
Name
(RefSeq) uncharacterized CRM domain-containing protein At3g25440, chloroplastic
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
obr  Oryza brachyantha (malo sina)
Pathway
obr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:obr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102712716
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:obr03019]
    102712716
Enzymes [BR:obr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     102712716
Messenger RNA biogenesis [BR:obr03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     102712716
SSDB
Motif
Pfam: CRS1_YhbY NikR_C
Other DBs
NCBI-GeneID: 102712716
NCBI-ProteinID: XP_006652457
UniProt: J3LZ63
Position
4:13375594..13378949
AA seq 479 aa
MGSRVLSLRRMERRWRWPRSRTTYPSSGAVSSAPLDGRMGLRAPRPCSPSYTSHKVLHRD
PGLFSRWQSYNLQTYFCFHTSRPINCPNHTIAEPQQKPGDAVSVDESGRPKAKRKKLKGR
RAVIKFLKSLRWKKKREFQRMTAEEKILYKLKLARSKEERIVAALKKIEPDDPSEPTHDP
EVLTPEEHFYFLKMGQKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPDEVK
EIASELARLSGGIVLDIQEENTIIMYRGKNYAQPPPEIMSPRVSLSRKKALDKSKYRERL
RALRRYIPRLEQELVDLHAQMKLAGVHRGLSAAKDITCISGSVNSSSSKEYSVHKRSVSD
LLSESIQGSARLEDENYEVDNGSTSESYTYSESEDLSDIFETDSEEQVEVSKEKPLYLDR
LDKFPSENNDNEPDDFEEHLRKIASLSDKTDSSAKELKVSELDEIDKIFLRASSLLKKR
NT seq 1440 nt   +upstreamnt  +downstreamnt
atgggcagccgggtgctctcgctccggcggatggagaggaggtggcggtggccgcggtcg
cgtacgacttatccctcctccggtgctgtaagttcggctcctctcgacgggaggatgggg
ctgcgcgcgcctcgtccgtgctcaccatcttatacttcccacaaggttcttcaccgagat
cctggactcttcagccggtggcaaagttataaccttcaaacatacttttgtttccataca
agtcgaccaatcaactgtccaaatcataccatagcagaacctcaacaaaaaccaggagat
gctgtgtcagttgatgaatctggtaggcccaaagcaaagaggaaaaagttaaaaggaaga
agggcggtgatcaaatttttgaaatccctgagatggaagaagaaaagggagtttcaaagg
atgactgcggaggaaaaaattttgtacaaattgaagctagctcgaagcaaggaagaacga
attgttgcagctttgaagaaaattgaaccggatgacccatcagagcctacccatgatcct
gaagtgcttacacctgaggagcacttctatttcctcaagatgggccaaaaatgtaaaaac
tatgttcctgtaggaagacgtgggatataccagggagtgatcttgaacatgcatttgcac
tggaaaaagcaccaaacacttcaagtaattgtgaagacattcacaccagacgaggttaag
gaaattgcctcagagttagccagattaagtggtgggattgtgctggatattcaagaagag
aatacaattatcatgtacagaggaaaaaactatgcacagccaccaccggaaataatgtct
ccaagagttagcctttccaggaaaaaggcactggataaatcaaaatacagagaacgcctc
cgagctcttaggcggtacattccgaggcttgaacaggagcttgtagatcttcatgcacag
atgaagttagctggagttcatagaggactgagtgctgcaaaagacattacttgtatttca
ggtagtgtaaacagttcgtcttcaaaagaatactcagttcacaagagaagtgtatctgat
ctcctgtcagaaagtatacaagggtctgcaaggctagaggatgaaaattatgaggttgat
aatggttcaacttcagagtcttacacatactctgaatcagaggatctctctgacattttt
gagacggactcagaggagcaggtagaggtcagcaaggagaagccgctgtatctagatagg
ctggataagtttccatcagaaaataatgacaacgaaccagatgattttgaggagcatcta
cggaagattgcctcgctgtctgataagaccgattcatctgctaaagaactcaaagtatcg
gagcttgatgagattgataaaatcttcttgagagctagttcattgctgaagaaaagatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

Download RDF
DBGET integrated database retrieval system