KEGG   Oryza brachyantha (malo sina): 102713295
Entry
102713295         CDS       T02995                                 
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
obr  Oryza brachyantha (malo sina)
Pathway
obr03022  Basal transcription factors
obr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:obr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    102713295
  09124 Replication and repair
   03420 Nucleotide excision repair
    102713295
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:obr03021]
    102713295
   03400 DNA repair and recombination proteins [BR:obr03400]
    102713295
Transcription machinery [BR:obr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     102713295
DNA repair and recombination proteins [BR:obr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     102713295
SSDB
Motif
Pfam: BSD PH_TFIIH MRP Snapin_Pallidin
Other DBs
NCBI-GeneID: 102713295
NCBI-ProteinID: XP_040382767
Position
8:complement(9200671..9210618)
AA seq 599 aa
MGSMTIGAKYKTTLKDPGTTGVLRMNEDKFTFTPNDPRSAMKLNVDFRSIKGHKFNKVDG
NKPAPPLLNLSKDSDKGGGYIFEFENVTSRDLSRDFVARVLGKQQGTIPPPENSVTSTDP
EQLSAAEMQRRMKLLHEDSELQKLHRKLVIGNILQESEFWATRKNLLDDEANKGSKQRPG
FKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAEKPAVHRAFLNFVPKKMSEKDFWTKY
FRAEYLLRTKNTVAAAAEAAEDEELAVFLKNDDILAKEARLKIKRVDPTLDMEADAGDDY
IHLPDHGIIRDGSKETIENDGELARRTLSQDLNRHAAVVLEGRSSDVELTDTKTVAEALA
RSKREPPPSSISDDTSHERLVKVARMTEIEDLQAPRSVPYAPLCIKDPREYFDSQQANAL
RSLGGNNDGRHARNCRLSAHDAFDHLLGQISSIKVNGLNYPVVQSDVAFKVLNELNDGIS
RTRRLNLKNPQDSLLGQIPRHTRDELMDHWTAIQELLRHFWSSYPITTSVLYNKVQRIKD
AMTQIYQKLQNIKESAQPDVRHEISQLVKPMTQALDAAFNHELEQQQKSSKSGNKPNGF
NT seq 1800 nt   +upstreamnt  +downstreamnt
atggggtccatgacgatcggcgccaagtacaagaccacgctcaaggaccccggcaccacc
ggcgtcctccgcatgaacgaggataagttcacattcactcctaatgacccgcggtcggcg
atgaagctcaatgttgatttccggagcatcaaaggtcacaagttcaacaaagtagatggt
aacaaaccagcaccaccattactgaatctttcaaaagactccgacaagggtggaggctac
atatttgagtttgagaatgttactagccgtgatctatctcgtgactttgtagctagagtt
ttaggtaaacaacaaggtacaataccgccccctgaaaattcagttacttcaactgatcca
gaacagcttagtgctgcagaaatgcaacgacgcatgaaattgctgcatgaagatagtgaa
ttgcagaagttacatagaaagcttgttattggcaatatcctgcaagaatctgaattttgg
gcaacaagaaagaatttacttgatgatgaagcaaataaagggtcaaaacaaaggccaggt
ttcaaaagtgcaatgctagctgatgttagaccatcggctgatggtcggacaaataaggtt
acgttcagtctcaccaccgagataattcatcagatatttgcagagaaaccagctgtccat
cgagcctttttaaattttgttccaaaaaagatgtcagaaaaggatttttggacaaaatat
tttagagctgaatatcttcttaggacgaaaaatacagtggcagcagctgctgaggctgct
gaagatgaagaattggccgtcttcctgaagaatgatgatatactagcaaaggaggcaagg
ttgaagataaaacgagttgacccaacattagacatggaggcagatgcaggagatgactac
atccatcttccggaccatgggattatccgtgatggcagcaaagagacaattgaaaatgat
ggtgaattggccaggagaacactttcacaggatctgaatcgacatgcagctgttgtgctt
gaaggaagatcttcagacgtggaattaaccgatacaaagactgttgctgaagcacttgca
aggtccaagcgagaaccacctcctagttctatttctgatgatactagtcatgagagattg
gtaaaggtggcccgcatgactgagatagaggatctgcaagctccacgaagtgttccttat
gcaccactttgtataaaggatcctcgagaatattttgattcccaacaagcaaatgctctg
agatctttgggtggcaacaatgatggaagacatgctcgtaattgtagactgagtgcacat
gatgcatttgatcatttgttgggtcaaatatcttctataaaagttaatggattgaactat
ccagttgttcagtcagatgtggcttttaaggttctgaatgaattgaatgatggaatttca
cggacaagaagacttaatcttaagaatcctcaagatagtctgcttggtcaaatccctcga
catacacgagatgaacttatggatcactggacagctatccaggaattattgcggcatttt
tggtcatcatatccaataacaacttcagttctttataataaggttcaaagaattaaggat
gcaatgacacaaatatatcaaaagttgcagaatataaaggaatcagcgcaacctgatgtg
aggcatgaaatatctcaactagtaaagcccatgacccaggctttggatgctgccttcaac
catgagttggagcagcagcaaaaatcatcgaagtctgggaataagcccaatgggttttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (4)   
   Pfam (4)   
All databases (22)   

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