KEGG   Afipia carboxidovorans OM5 (Mississippi): OCAR_5919
Entry
OCAR_5919         CDS       T00783                                 
Name
(GenBank) DNA-binding protein HU 1
  KO
K03530  DNA-binding protein HU-beta
Organism
oca  Afipia carboxidovorans OM5 (Mississippi)
Brite
KEGG Orthology (KO) [BR:oca00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:oca03032]
    OCAR_5919
   03036 Chromosome and associated proteins [BR:oca03036]
    OCAR_5919
   03400 DNA repair and recombination proteins [BR:oca03400]
    OCAR_5919
DNA replication proteins [BR:oca03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    OCAR_5919
Chromosome and associated proteins [BR:oca03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    OCAR_5919
DNA repair and recombination proteins [BR:oca03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      OCAR_5919
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_euk_2 HU-CCDC81_bac_2
Other DBs
NCBI-ProteinID: ACI93040
Position
1835381..1835680
AA seq 99 aa
MAKKAATPATVTLKHLAAALAEEHELSKKTAEAILTDLVTKVTKHLKKGDRIRIVGLGIL
QVRKRAARMGRNPATGEAIHIKASKKVAFRASKELKEAI
NT seq 300 nt   +upstreamnt  +downstreamnt
atggcgaagaaagcagcgactccagcgactgttacgctcaagcaccttgccgccgcactc
gcggaagaacacgaactctccaagaagaccgcggaagcgattctgaccgacctcgtcacc
aaggtcaccaagcacctcaagaagggcgaccgcatccgtatcgtgggtctcggcatcctc
caggtccgcaagcgcgccgcccgcatgggccgcaatccagccactggcgaagcgatccac
atcaaggccagcaagaaggttgccttccgcgcctccaaggagctgaaggaagcgatctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (20)   

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