KEGG   Oceanicola sp. D3: FHY55_02325
Entry
FHY55_02325       CDS       T06139                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
ocd  Oceanicola sp. D3
Pathway
ocd03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ocd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    FHY55_02325 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ocd03021]
    FHY55_02325 (rpoB)
   03400 DNA repair and recombination proteins [BR:ocd03400]
    FHY55_02325 (rpoB)
Enzymes [BR:ocd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     FHY55_02325 (rpoB)
Transcription machinery [BR:ocd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     FHY55_02325 (rpoB)
DNA repair and recombination proteins [BR:ocd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      FHY55_02325 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RnfC_N
Other DBs
NCBI-ProteinID: QDC08149
UniProt: A0A5B8BUB9
Position
452741..456877
AA seq 1378 aa
MATTLLGHKRFRRYYGKIREVLEMPNLIEVQKSSYDLFLKSGDQPEPTDGDGIMGVFQGV
FPIKDFNETAVLEFVKYELEKPKYDTEECQQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHASGKLLFAC
RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEAIMDAYYDTVSYKLKK
NKGWVTKFFPERVRGTRPAYDLVDAKTGEVIAEAGKKVTPRAVKKIIDEGEITDLLIPFE
HIVGKFVAKDIINEETGAIYVEAGDELTWETDKDGEVTGGSLKELVDAGITDIPVLDIDG
VNVGAYIRNTMANDKNMNRDTALMDIYRVMRPGEPPTVEAASTLFDSLFFDSERYDLSAV
GRVKMNMRLDLDAEDTQRTLRKEDIVACIKALVELRDGKGEVDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVSHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINNLASFAR
VNKYGFIETPYRRVENGKVTDEVHYMSATEEMRHTVAQANASLDEDGKFTNDMVNTRQSG
EYTLAPNENVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQKQAVPLLQAEAPLV
GTGIERKVAIDSGAAIQAFRSGIIDQVDAQRIVVRATEDLEPGDPGVDIYRLRKFQRSNQ
NTCINQRPLVKVGDTVVKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISER
IAKDDVFTSVHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVGPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGDFGTVVEVRVFNRHGVEK
DERALQIEREEVERLARDRDDELAILDRNIYARLKDMILGKMAIKGPKGVKPKSEVTEEL
LDSLSRGQWWQLAVGEEHEAQAIEALNAQYEAQKRVLDARFEDKVEKVRRGDDLPPGVMK
MVKVFIAVKRKLQPGDKMAGRHGNKGVISRVVPVEDMPFLGDGTPVDFVLNPLGVPSRMN
VGQILETHMGWASRGLGIQVDEALGEYRRSGDLTPVRDAMKIAYGEEAYEEHIQSLDEGM
ILETAGNVTRGVPIATPVFDGAKEADVNDALTRAGFSESGQSILFDGRTGEQFARPVTVG
IKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNFEAGIPESFNVLVKEVRGLGLNMELLDAEGEE
NT seq 4137 nt   +upstreamnt  +downstreamnt
atggcgacgaccctcctcggccacaaacgtttccgccgttactacggcaaaatccgcgaa
gttctggagatgccgaacctcatcgaggttcagaaaagctcctacgacctgtttctgaaa
tccggcgaccagcccgagcccaccgatggtgatggcatcatgggcgtgtttcagggtgtt
ttcccgatcaaggatttcaacgaaaccgccgtgcttgaattcgtcaagtacgagctggaa
aagcccaagtacgacaccgaagagtgccagcagcgcgacatgacctacagcgccccgctg
aaggtgacgctgcgcctcatcgtgtttgatgtggacgaagacactggcgccaagtcggtg
aaggacatcaaggaacaagacgtgttcatgggcgacatgcccctgatgacgcccaacggc
accttcgtggtgaacggcaccgagcgtgtgatcgtttcccagatgcaccgttcgcccggc
gtgttctttgaccacgacaaaggcaagacccacgccagcggcaagctgctcttcgcctgc
cggatcatcccctatcgcggctcctggctggacttcgagtttgacgccaaggacatcgtc
tttgcgcgcatcgaccgtcgccgcaaactgcccgtgaccaccctgctctatgccctcggg
ctggatcaggaggcgatcatggacgcctactacgacacggtcagctacaagctgaagaag
aacaagggctgggtcaccaagttcttccccgagcgcgtgcgcggcacccgcccggcctat
gaccttgtcgacgccaagaccggcgaagtgattgccgaagctggcaagaaggtgacgccc
cgcgcggtgaagaagatcatcgacgagggtgagatcaccgatctgctgatccccttcgag
cacatcgttggcaagtttgtcgccaaggacatcatcaacgaagaaaccggcgcgatctac
gtcgaggccggcgatgagctgacttgggaaaccgacaaggacggtgaagtgactggcggc
tccctgaaggagctggtggacgcgggcatcaccgatattccggtgctcgacatcgacggc
gtgaacgtgggtgcctacatccgcaacaccatggcgaacgacaagaacatgaaccgcgac
accgcgctcatggacatctaccgcgtcatgcgccccggcgagccgcccaccgtggaagcc
gccagcaccctgtttgacagcctgttctttgacagcgagcgctacgacctcagcgccgtg
ggccgcgtgaagatgaacatgcgcctcgacctcgatgccgaagacacccagcgcacgctg
cgcaaggaagacatcgtggcctgcatcaaggccctcgtcgagctgcgtgacggcaagggc
gaggtggacgacatcgaccacctcggcaaccgccgcgtccgctcggttggcgagctgatg
gagaaccagtatcgcgtgggtctgctccgcatggagcgggcgatcaaggagcgcatgagc
tctgtcgagatcgacacggtgatgccgcaggatctgatcaacgccaagcctgccgctgcc
gcggtgcgcgagttcttcggctccagccagctgtcgcagttcatggaccagaccaacccg
ctttcggaagtctcccacaagcgtcgcctttcggcgcttggtccgggcggcctgacccgt
gagcgtgccggctttgaggtgcgcgacgtgcaccccacccactatggccggatgtgcccg
attgaaacgccggaaggcccgaacatcggcctgatcaacaacctcgccagctttgcgcgg
gtcaacaagtacggcttcatcgaaacgccctatcgccgcgtcgaaaacggcaaggtgacc
gatgaagtgcattacatgtcggccaccgaagagatgcgccacacggttgcacaggccaac
gccagcctcgacgaggatggcaagtttaccaacgacatggtcaatacccgccagtcgggt
gaatacacgctggcccccaacgagaacgtggacctgatcgacgtgtcgccgaaacagctg
gtttcggttgccgcctcgctcatccccttcctcgaaaacgacgacgccaaccgcgccctc
atgggctcgaacatgcagaagcaggccgtgccgctgctgcaggccgaagctccgcttgtg
ggcaccgggatcgagcgcaaggtggccatcgactccggcgccgccattcaggcgttccgc
agcgggatcatcgaccaggttgatgcccagcggatcgttgtgcgcgccaccgaagacctc
gagccgggcgatccgggcgtggacatctaccgtctgcgcaagttccagcgttccaaccag
aacacctgcatcaaccagcgtccgctggtgaaggtgggtgacacggtggtgaagggcgag
gttatcgctgacggtccctcgaccgacatgggcgaactggccctcggcaagaacgtcgtc
gtcgccttcatgccgtggaacggctacaactacgaggactccatcctcatctccgagcgc
atcgccaaggatgacgtgtttacctcggtccacatcgaagaattcgaagtggccgcgcgc
gacaccaagcttggcccggaagagatcacccgcgacatcccgaacgtcggcgaggaagcc
ctgcgcaacctcgacgaagccgggatcgtgtatatcggtgccgaagttggccccggtgac
attctcgtcggcaagatcaccccgaagggcgaaagcccgatgaccccggaagagaagctg
cttcgcgcgatcttcggcgaaaaggcctctgacgtgcgcgacacctcgctgcgtctgccc
ccgggcgatttcggcacggtcgtggaagtgcgcgtcttcaaccgccacggcgtggagaag
gacgagcgggcgcttcagattgagcgtgaagaggtggaacgccttgcacgtgaccgggac
gacgagctcgcgatcctcgaccgcaacatctatgcccgcctgaaggacatgatcctgggc
aagatggcgatcaagggcccgaaaggcgtgaagccgaagtcggaggtcaccgaagagctg
ctcgacagcctgtcgcgcggccagtggtggcagcttgccgtgggcgaagagcatgaggcg
caggccatcgaggctctgaacgcgcaatacgaggcgcagaagcgcgtgctcgatgcccgt
ttcgaggacaaggtggagaaggtgcgccgcggcgacgatctgcccccgggcgttatgaag
atggtcaaggtcttcatcgcggtgaagcgcaagcttcagccgggcgacaagatggccggt
cgtcacggcaacaagggtgttatctcccgcgttgtgcccgtggaagacatgcccttcctc
ggtgacggcactcccgtcgacttcgtgctcaacccgctcggcgtgccgtcgcggatgaac
gttggtcagattctcgaaacgcacatgggctgggcctctcgcgggcttggcattcaggtg
gacgaggcgcttggcgaataccgccgctccggcgacctgaccccggtgcgcgacgcgatg
aagattgcctatggcgaagaggcctatgaggagcacatccagtcgctcgacgagggtatg
atcctcgagactgctggcaatgtgacccgcggtgtgccgattgccacgccggtctttgac
ggggccaaggaagctgacgtgaacgatgcgctcacccgcgcaggcttcagcgaaagcggc
cagtcgatcctgtttgatggccgcaccggcgagcagtttgcccgcccggtgaccgtgggc
atcaagtatctgctgaagctgcaccaccttgtggacgacaagatccacgcacgttcgacc
ggcccctacagccttgttacccagcagccgctcggtggtaaggcccagttcggtggccag
cgtttcggggaaatggaagtctgggctctggaagcctatggcgccgcctacacccttcag
gaaatgctgaccgtgaagtcggacgacgtggctggccggaccaaggtgtatgagtcgatc
gtcaagggcgaggacaacttcgaggcgggcattcccgagagcttcaacgtgctcgtcaag
gaagtccgcggcctcggcctgaacatggaactcctggatgcggagggcgaggaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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