KEGG   Oceanicola sp. D3: FHY55_06575
Entry
FHY55_06575       CDS       T06139                                 
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
ocd  Oceanicola sp. D3
Brite
KEGG Orthology (KO) [BR:ocd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ocd03032]
    FHY55_06575 (topA)
   03400 DNA repair and recombination proteins [BR:ocd03400]
    FHY55_06575 (topA)
Enzymes [BR:ocd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     FHY55_06575 (topA)
DNA replication proteins [BR:ocd03032]
 Prokaryotic type
  DNA Topoisomerases
   FHY55_06575 (topA)
DNA repair and recombination proteins [BR:ocd03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      FHY55_06575 (topA)
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim zf-C4_Topoisom Toprim_4
Other DBs
NCBI-ProteinID: QDC08927
UniProt: A0A5B8BPL5
Position
complement(1288585..1291197)
AA seq 870 aa
MPVVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPPKDGSVDPEHEFEMKWEVASDSKK
HVAAIANALKDDNALILATDPDREGEAISWHLQEALTKRKAIKKDTPVSRVTFNAITKDA
VTEAMANPRQVDMELVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVE
REMEIEAFRAREYWSVKALLDTPRGQTYEARLTVLGGKKLERYDIENETAAELAVQAINS
RDLTVKSVEAKPNTRNPSPPFMTSTLQQEASRKFGMGARACMGTAQRLYEAGHITYMRTD
GIDMAPEAVTAAREAIGERFGKDYVPGEPRIYKNKAKNAQEAHECIRPTDMTKDSKALNL
EPEQARLYDLIWKRTLASQMASAKFERTTVTVGSADGQVELRATGQVVLFDGFLKIYEEG
RDDEVVDDDDRRLPQVSEGEAAGKKQITPEQHFTQPPPRYTEATLVKRMEELGIGRPSTY
ASIVTTIQDREYVRKDKNRLIPEDKGRLVIAFLSNYFRRYVGYEFTAKLEEELDEISAGD
AQWQAVLASFWRDFKAAIEETSELRITEVLEKINEVLEPHLFPPLPEGGDPRLCPHCGKG
RLSMRTARSGGAFIGCSNYPECRYTRPFGPPDPEAEKSAIPPEGKLLGEDGGDKIWVMKG
RFGPYVQRGEVTEDNKKPPRQSVPKEWKPEELELATAVKLLALPRLIGTHPEDGVNVWAN
IGRYGPYLKHAESTSDRGGTNANLEGLDEVWEVGMNRAVQLLAEKVASRGGRGAAKTLRE
LGEHPEAGGVVAIMEGKYGPYVKWDKINATLPKGEDPEKFTMDAAVELIAEKAAQKGKKR
PAAKKATAKKTTAKKPAAKKAPAKKTAAKK
NT seq 2613 nt   +upstreamnt  +downstreamnt
atgccagttgtcgttgtcgagtcccccgccaaggccaagacaatcaacaaatatctgggc
tccgattacaccgttctggcctcttacggccacgtgcgcgacctgcccccaaaggacggt
tcggtggaccccgagcatgagttcgagatgaaatgggaggtggcctccgacagcaaaaag
cacgtggccgccatcgcaaacgccctgaaggatgacaacgcgctcatcctcgcaaccgac
cccgaccgcgagggcgaggcgatttcttggcacctgcaggaggctctgaccaagcgcaag
gcgatcaagaaagatacgccggtgtcgcgcgtgaccttcaacgccatcaccaaggatgcg
gtgaccgaggccatggccaacccgcgccaggtcgatatggagctggtcgaggcctacctc
gcccgccgcgcgctcgattatctcgtcggcttcaacctctcccccgtgctctggcgcaag
ctgcccggtgcgcgctccgcaggccgcgtccagtcggtctgcctgcgcctcatcgtcgag
cgcgagatggagatcgaggctttccgcgcccgtgaatactggagcgtgaaggccctgctc
gacacgccgcgcggccaaacctacgaggcccgcctcaccgtgctcggtggcaaaaagctt
gagcgctacgacatcgaaaacgaaaccgccgccgagctggcggtgcaggcgatcaattcg
cgtgacctcaccgtcaaatcggtcgaggccaagcccaacacccgcaacccctcgccgccc
ttcatgacctccacgctccagcaggaggcgagccgcaagttcggcatgggcgcccgcgcc
tgcatgggcaccgcccagcgtctctacgaggccgggcacatcacctacatgcggacagat
ggcatcgacatggcccccgaagccgtgacggcggcgcgcgaagccatcggcgagcgcttc
ggcaaagactacgttccgggcgagccgcgcatctacaagaacaaggccaagaacgcgcag
gaagcccacgagtgtatccgccccacggatatgaccaaggattccaaggccctgaacctc
gaacccgagcaggcccggctctatgatctgatctggaagcgcacgttggcctcccagatg
gcctccgccaaattcgagcgcaccactgttaccgtcggcagcgccgatgggcaggttgag
ctgcgcgccaccgggcaggtggtgctctttgacggcttcctgaagatctacgaagagggc
cgcgacgacgaggtggtggatgatgacgaccgccgcctaccgcaggtttccgagggcgaa
gccgcgggcaaaaagcagatcaccccagagcagcacttcacccagcccccgccccgctac
accgaggccacgctggtgaaacggatggaagagctgggcatcggccgcccctccacctac
gcctcaattgtcaccacgattcaggatcgtgagtatgtccgcaaagacaagaaccgcctg
atccccgaagacaagggccggctggttattgcctttctgtccaactacttccgccgctac
gtgggctatgagttcactgccaagctggaagaagagctcgacgagatttccgccggtgac
gcccagtggcaagcggtgcttgcctccttctggcgtgatttcaaagccgcgatcgaagag
acctccgagctgcgcatcaccgaggtgctggaaaagatcaacgaggtgctcgaaccgcac
ctgtttcccccgctccccgagggtggcgacccccgcctttgccctcattgcggcaagggc
cggctctcgatgcgcaccgcccgctccggcggcgccttcatcggctgttccaactacccc
gagtgccgctacacccgccccttcggcccgcccgatccggaagccgagaaaagcgcgatc
ccgcccgagggcaagttgctgggcgaggatggcggcgacaagatttgggtgatgaagggc
cgctttggcccctacgtccagcgcggcgaggtgacggaagacaacaagaagcccccgcgc
cagtcggtccccaaggaatggaagcccgaagagcttgagctggccaccgccgtcaagctg
ctggccctgccccgcctgatcggcacccaccccgaagatggcgtgaacgtctgggccaac
atcgggcgctacggaccctacctgaagcacgccgaaagcacgtcggatcggggcggcacc
aatgccaacctcgaagggctcgacgaggtctgggaagtcggtatgaaccgcgcggtgcag
cttctggccgaaaaggtcgcctcccggggcgggcgcggcgccgcgaaaaccctccgtgag
ctgggcgaacatcccgaggccggtggcgtcgtggcaatcatggagggcaagtacggcccc
tacgtgaaatgggacaagatcaacgccactctgcccaagggcgaagaccccgagaaattt
accatggatgccgccgttgagctgattgccgagaaggccgcgcagaagggcaagaagcgc
cctgcagcaaagaaggcgacagccaagaaaacaacggccaagaagcctgccgccaagaag
gccccggcaaagaaaaccgcggcgaagaaatag

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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