KEGG   Oceanimonas sp. GK1: GU3_11350
Entry
GU3_11350         CDS       T01667                                 
Name
(GenBank) exodeoxyribonuclease V, beta subunit
  KO
K03582  exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
Organism
oce  Oceanimonas sp. GK1
Pathway
oce03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:oce00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    GU3_11350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oce03400]
    GU3_11350
Enzymes [BR:oce01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     GU3_11350
DNA repair and recombination proteins [BR:oce03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     GU3_11350
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PDDEXK_1 AAA_25 AAA_11 AAA_30
Other DBs
NCBI-ProteinID: AEY02025
UniProt: H2FWP3
Position
complement(2469028..2472633)
AA seq 1201 aa
MSPSRPLALTFPLHGSRLIEASAGTGKTFTISALYLRLVLGHGGEQGFARELLPPEILVV
TFTDAATQELRDRIRARLVEAAAVFRGEAEGDELLATLRDDFPSEQWPGCAHRLDIAAQW
MDEAAVSTIHGWCQRMLREHAFDSGSLFTQTLQTDHSELLAEVVRDYWRRQCYPLQGAAL
DWVIDHWQTPDALLPKLRPLLSEPGEADGELDALLEGTLSARARRLAELKAPWPAWADEL
ALLLDKAVADKAVDGRKLQARYYQPWLNKLRAWAGSREADLALGTGFERLTPEGLHAIWK
KGEPPVHPALEAMATLPGQLAALADPAEPALRHAAAWVRRHFELEKRRRAEMGFDDMLTR
LDEALAGENGPRLAEVIRQQFPVALIDEFQDTDPLQYRIFDTIYRVADNCADSGLFMIGD
PKQAIYAFRGADIYTYLSARAATEGRHYSLGTNFRSSTTMVAAVNRLFERAEAHPEGAFL
FRDGEHNPLPFVSVQARGRDEHWQCEGAPQPALTLWQLDTDDDQPVAGGVYLEQMAARCA
SHMTHLLNLGGQGRAGFAGEHGLTPVQPSDMAVLVRSFREAQAIREALAARGVRSVYLSD
KDSVFESPEAGDLLHWLRACAEPEQDGKLRAALATATLGLSLSELERLNQDERHWEGRVM
QFRDYRRIWQRQGVLPMVHRLLHDFALPARLLRGTEGERKLTNLLHLAELMQQAAATLDG
EQALIRHLADCREGERQAADEQVLRLESDAALVRVVTIHKSKGLEYPLVFLPFICSFRES
GVRGAPVQLHEGGRKRLLLNPTDEQKAQAERERLGEDLRLLYVALTRARHACWLGLADIK
VGNGRASRLHDSAMGRLLGGGAVLSGPLQDWLTPLASEHTALCAAPEVTGEGWVDTQRAP
SAPVWASPARPAAEHWWIASYSALLSREEAGQRFDDAAPERPEAGKSGDDELERPFVPLR
PFELPSLHRFPRGPAAGTFLHGLLELVLNEGLANQPEELASQLARRCQLRGLEEWATPLA
DWLQGLLATPLFDGGPALQALGCFQPEMEFWLEVSRVQIPALDALVRRHILPQRERPALA
PGRLNGMLKGFIDLVFEHDGRYYVVDYKSNWLGPDDADYTRAAMEDQILRHRYDLQYVLY
VLALHRQLILRLPDYDYDTHMGGALYLFVRRPGAVFAHRPPRELIESLNTLFCGATEESL
P
NT seq 3606 nt   +upstreamnt  +downstreamnt
atgagcccatcccgtccgctggcgctgacctttcccctgcacggcagccggctgattgaa
gccagtgccggcaccggcaagacctttaccatttccgcgctgtacctgcggctggtgctg
ggccatggcggcgagcagggctttgcccgagagctgctgccgccggagatcctggtggtc
acctttaccgacgccgccactcaggagctgagagaccgcattcgcgcccggctggtggaa
gcggcggcggtattccgcggcgaggctgagggcgatgagctgctggcgaccctgcgggat
gactttccctcggagcagtggcccggctgtgcccaccggctcgatatcgccgcccagtgg
atggacgaggcggcggtgtccaccattcacggctggtgtcagcgcatgctgcgcgagcac
gcctttgacagtggcagcctgtttacccagaccctgcagaccgatcacagtgagctgctg
gccgaggtggtgcgcgattactggcgccgtcagtgctaccccctgcagggcgcggccctc
gactgggtgattgaccactggcagacaccggatgcgttgttgcccaaactacggccgctg
ctgagcgagcccggcgaggccgacggcgagttggatgccctgctggaaggcaccctgagc
gcgcgggcgcggcggcttgccgagcttaaagcgccctggccggcctgggctgacgagctg
gcgttgctgctcgacaaggcggtggccgacaaggcggtggacgggcgcaagctgcaggcc
cgttattaccagccctggctcaacaagctgcgggcctgggccggctccagggaggcagac
ctggctctcggtaccggctttgaacggttgacccccgagggcctgcatgccatctggaaa
aagggggaaccgccggtacacccggcgctggaggccatggccaccctgcccgggcaactg
gccgccctggccgaccccgccgagccggcgctgcgtcatgccgccgcctgggtgcgtcgg
cactttgagctggaaaaacgccgccgcgccgaaatgggctttgacgacatgctcacccgt
ctcgacgaggccctggcgggggagaacggcccgcggctggcggaggtgatccggcaacag
ttcccggtggcgctgattgacgaatttcaggacacggatccgctgcagtaccgtattttc
gacaccatttaccgagtagccgacaactgcgccgacagcggcctgtttatgataggggac
cccaagcaggccatatacgcctttcgcggcgccgatatttacacctatctgtcggcccgg
gccgccaccgaaggccgtcactacagcctcggcaccaactttcgttcctccacgaccatg
gtggcagcggtcaaccggctgtttgagcgggccgaagcccaccccgaaggcgcgtttttg
tttcgcgacggcgagcacaatccgctgccctttgtgtcggtgcaggcgcgcggtcgtgac
gagcactggcaatgcgagggcgcgccgcagccggcgctgaccctgtggcagctggacacc
gacgacgatcagccggttgccggcggcgtctacctcgagcagatggcggcccgttgtgcc
agccacatgacgcatctgctcaatctgggcggccagggccgtgccgggtttgccggtgag
catggcctgaccccggtacagcccagcgacatggcggtgctggtgcgcagctttcgcgag
gctcaggccattcgtgaagccctggcggcccgaggggtgcgcagcgtgtatctgtccgac
aaggactcggtgtttgaaagccccgaggcgggggatctgctgcactggctgagggcctgc
gccgagccggagcaggacggcaaactcagggcggcgctggccaccgccaccctggggctc
agtctgtctgagctggagcggctcaatcaggacgaacgccactgggaaggcagagtgatg
cagtttcgggattaccgccgtatctggcagcgccagggcgtgctgcccatggtgcaccgg
ctgctgcacgacttcgcgctgccggcccgcctgctgcggggtaccgagggcgaacgcaag
ctcaccaatctgttgcacctggcggagctgatgcagcaggccgccgccaccctggacggc
gagcaggcactgatccgccacctggccgattgcagggagggggagcggcaggccgccgac
gaacaggtattgcggctggaaagcgacgccgccctggtacgggtggtgaccattcacaag
tccaagggactggaatatcccctggtgtttttgccctttatctgcagctttcgggaaagc
ggcgtccgcggggccccggtgcagctgcacgagggcggccgcaagcggctgctgctaaac
cccaccgatgaacaaaaggcccaggccgagcgggagcggctgggggaagatctgcgcctg
ctctatgtggcgctgacccgggcccgccatgcctgctggctggggctggcggatatcaag
gtcggcaacggccgggcctcgcgcctgcacgactcggccatgggccggttgctgggcggc
ggtgccgtgctgagcgggccgctgcaagactggctcacgcccctggcaagcgaacacacc
gcgctgtgcgcggcgcccgaggtcaccggggaaggctgggtggatacgcaacgagcgccg
tcggcgccggtctgggccagcccggcccggcccgccgccgagcactggtggatagcgtcc
tacagtgccctgctcagccgggaagaggccggccagcgttttgacgacgccgcccccgag
cggcccgaagcgggcaaaagcggggatgacgagctggaacggccctttgtgccgctgcgc
ccctttgagcttcccagcctgcatcgctttccccgtggtccggcggcgggcacttttttg
catggcctgctggagctggtgctgaatgaagggctggcaaatcagcccgaggagctggca
tcccagcttgcccggcgctgccagttgcggggcctggaggagtgggccacgccgcttgcc
gactggctgcaggggctgctggccacgccgctgtttgacggtggcccggcattgcaggcg
ctcggctgttttcagccggaaatggagttctggctggaggtcagccgagtgcagatcccc
gcgctggatgcactggtgcgacgccatattctgccgcagcgggagcggccggcactggcc
ccgggccggctgaacggcatgctcaagggctttatcgatctggtgtttgagcatgacggc
cgttattacgtggtggactacaagtcgaactggctgggcccggatgacgccgattacaca
cgggcggcgatggaggatcagatccttcgccaccgttacgatctgcaatacgtactctat
gtgctggcgctgcatcgccagttaatactgcggctgcccgattacgactacgacacccac
atgggcggtgccctgtatctgtttgtgcgccggcccggcgcggtgtttgcacaccggccc
ccccgtgagctgatagaaagcctgaatacgctgttttgcggtgccaccgaggagagcctg
ccatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (53)   

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