KEGG   Oceanisphaera avium: CBP12_08860
Entry
CBP12_08860       CDS       T04855                                 
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
ocm  Oceanisphaera avium
Brite
KEGG Orthology (KO) [BR:ocm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ocm03016]
    CBP12_08860
Enzymes [BR:ocm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     CBP12_08860
Transfer RNA biogenesis [BR:ocm03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    CBP12_08860
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2
Other DBs
NCBI-ProteinID: ART80245
UniProt: A0A1Y0CZK8
Position
1923253..1923780
AA seq 175 aa
MGLSCDYSRLFLAFPATELSESLSLLQDQLALPGRRVPVHQFHLTLRFLGALTPTQFDSL
HRQLSGVRLAKFHLRLDNLGYFPKAQVAWLGPTRVPTALSTLYQELLLRCASLRLAKPHK
AYRPHVSVYRNTPAPPRITISPLAFSPPYLALYNSTASEQGVHYEELARWPLVKS
NT seq 528 nt   +upstreamnt  +downstreamnt
gtgggtttgagctgcgattattcccgcttattcttagcattccccgccactgagctcagt
gagtcattgagcttacttcaagaccaactggcgcttcctggacgacgagtccccgttcat
caatttcatttaactttgcgttttttaggagcgctcacgcctacacagtttgattctttg
catcggcaactatcgggggtgcgcttagctaaatttcatttacgtctagataatttaggc
tatttccctaaggcgcaagtggcttggttagggccgaccagagtacctacagcactgagc
actctctatcaagagttgttattacgctgtgcttcgttgcgtttagctaagccccataaa
gcttatcggccgcacgtgagtgtatatcgtaatacccccgcgcctcctcggattaccatt
agcccgctcgcctttagcccgccctatttagccttatacaattccactgccagtgagcaa
ggtgtgcactatgaagaattagcacgctggcccttagtaaaaagttaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (20)   

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